Pantoea sp. At-9b: Pat9b_3174
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Entry
Pat9b_3174 CDS
T01386
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pao
Pantoea sp. At-9b
Pathway
pao03410
Base excision repair
pao03430
Mismatch repair
pao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pat9b_3174
03430 Mismatch repair
Pat9b_3174
03440 Homologous recombination
Pat9b_3174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pao03400
]
Pat9b_3174
DNA repair and recombination proteins [BR:
pao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Pat9b_3174
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Pat9b_3174
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pat9b_3174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
ADU70470
UniProt:
E6WGR1
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Position
complement(3491804..3493534)
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AA seq
576 aa
AA seq
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MIHSVELRRREPHADDTLPADLPPLLRRLYLQRGVRDAAELERGAKHLLPWQTLGGIDAA
VTLLHQMLRDGRRIVVVGDFDADGATSTALTVLALRSLGGNIDYLVPNRFEDGYGLSPEV
VEQARARGAEMILTVDNGISSHAGVDTAHQYGIPVLVTDHHLPGDTLPAAEAIVNPNLND
SDFPSRALAGVGVAFYLMLALRAYLRSQNWFSDGRTEPNLAEWLDLVALGTVADVVPLDA
NNRILVWQGLSRIRAGKCRAGIRALLEIANRDARQLVASDLGFAIGPRLNAAGRLDDMSV
GVALLLTEDITEARMLANELDALNQTRKEIEQGMKSEALALCDALERQHTDLPLGLAFYH
PEWHQGVVGILASRLKERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLFPGL
MIKFGGHAMAAGLSLQEARYEEFRQRFAALIDEWLDGEALQGVIWSDGELRAQEFSLQTA
ELLREAGPWGQAFPEPVFDGRFKLLQQRLVGERHLKVMVEPIGGGPLLDGIAFNVDTTLW
PDSSVRQVELAYKLDINEYRGNRSVQLIIDHLWPLA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgatccattctgttgaattgcgtcggcgtgaaccccatgccgacgataccttacctgcc
gatttgccgccgctgctgcgtcggctctacctgcaacgcggtgtacgcgatgccgccgaa
ctcgaacggggtgcgaaacatctgctgccgtggcaaaccctgggcggcattgatgccgcc
gtgacgttgctgcatcaaatgctgcgcgacggtcgccgtattgtggtggtaggggatttt
gacgctgatggggccaccagtaccgcgttaacggtgttggcgctgcgcagcctcggtggc
aacattgattacctggtgccaaaccgttttgaagatggctacggcctcagcccggaagtg
gtggagcaggcgcgcgcgcgcggtgccgagatgatcctcacggtggataacggtatctct
tctcatgcgggcgttgatacggcacatcagtatggcattccggtgctggtcaccgaccac
cacctgccgggtgacacgctgcctgccgccgaagccattgttaacccgaatctgaacgac
agtgattttccctcccgcgccctggccggagtgggcgttgccttctatctgatgctggct
ttgcgcgcctatctgcgttcgcaaaactggtttagtgatggccgaacggaaccgaacctg
gcggaatggcttgatttggtggcgctgggcaccgtggctgacgtggtgccacttgatgcc
aacaaccgcattttggtatggcaagggctgagccgcatccgcgccgggaaatgccgtgcg
gggattcgtgctttgctggaaatcgccaatcgcgatgcacgacagttggtggcgagcgat
ttaggcttcgcaatcggcccgcgcctcaatgcagccgggcgtctggatgatatgtcagtg
ggtgtcgccttgttgctgaccgaagacatcaccgaagcacgcatgctggcaaacgagctg
gatgcgttgaaccagacgcgcaaagagatcgagcagggcatgaaaagcgaagcgctggcg
ttgtgtgatgcgctggagcgacagcacaccgatttgccgctcggtctggcgttttaccat
cccgaatggcatcagggggtggtgggtattctggcttcccgcctgaaagagcgtttccac
cgtccggtgatcgccttcgcgccagcgggtgacggcacgctgaaggggtccggccgctcg
attgctggtttgcatttgcgtgatgcgctggaacgtctcgataccctgtttcctggcctg
atgatcaaattcggcggtcacgcgatggcagccggtttatcgttacaggaagcacgctac
gaagagtttcgtcagcgctttgccgcgttgattgatgaatggctggacggcgaagcgttg
cagggggtgatttggtcagatggcgaattgcgtgcgcaggagttttcgctgcaaaccgcc
gagctgctgcgtgaggcaggtccgtggggccaggccttccctgaaccggtatttgatggg
cgttttaaactgctgcaacaacggctggtgggcgaacgtcatctgaaagtgatggtggag
ccgatcggcggcggtccgttgctggatgggatcgcgtttaacgtcgatactaccttgtgg
cccgacagtagcgtgcgtcaggttgagttggcctacaaactggacattaacgagtatcgc
ggcaaccgttcggtgcagctgattatcgaccacctgtggccgctggcataa
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