Pantoea sp. At-9b: Pat9b_3551
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Entry
Pat9b_3551 CDS
T01386
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pao
Pantoea sp. At-9b
Pathway
pao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pat9b_3551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pao03019
]
Pat9b_3551
03016 Transfer RNA biogenesis [BR:
pao03016
]
Pat9b_3551
Enzymes [BR:
pao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pat9b_3551
Messenger RNA biogenesis [BR:
pao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pat9b_3551
Transfer RNA biogenesis [BR:
pao03016
]
Prokaryotic type
tRNA degradation factors
Pat9b_3551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
RNase_II_C_S1
HTH_11
LexA_DNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ADU70841
LinkDB
All DBs
Position
complement(3889939..3892377)
Genome browser
AA seq
812 aa
AA seq
DB search
MSKDPFQEREAEKYENPIPSREFILALLEKREKPANRDEIAQELNISSEEQLEALRRRLR
AMERDGQLIFTRRQCYALPERLDLLRGKVIGHRDGYGFLRVEGQKDDFYLSAEQLKLCLH
GDVILAQPGGADRKGRREARVVRVLEPRNSQIVGRYFTDAGAGFVVPDDSRLSFDILIPQ
DQTLNARMGSVVVVEITQRPTRRTKALGKVTEVLGDNMGTGLAVDMALRTHEIPHVWPEA
VEKQIAKLKEDVPEEAKKGRVDLRQLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDNEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
ATGKLTGYKHYEAVMNSHARLTYTKVWNILQGNPELREQYAPLVKHLEELHRMYQVLEQA
REQRGGISFETEEAKFIFNADRRIERVERTVRNDAHKLIEECMILANIASARFVEKNEEP
ALFRDHDRPSDDSITSFRTVLNELGLSLPGGSKPQPIDYAELLTQIADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALASYAHFTSPIRRYPDLLLHRAIKYLLAKEQGEEKGNTTAT
GGYHYDMQQMLQLGQHCSMTERRADEATRDVADWLKCDFMQDQVGNVFNGVISSVTGFGF
FVRLNDLFIDGLVHVSSLDNDYYRFDPVGQRLIGESGGRTYRLGDAVEVRVEAVHMDERK
IDFALISSKRVPRGEGKTAREREKRGAKPPAKRRRDAGKNVNFEPDAAFRSDKKKPAKAK
SEKKSKKVSEKTRKIAAATKAKRAAKKKTSEA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagacccttttcaggaaagagaagctgaaaaatatgaaaacccgatccccagt
cgggaatttatcctggcgctattagaaaagcgtgaaaagcctgccaaccgtgatgaaatc
gcgcaggaactcaacatcagcagcgaagagcagctggaagcactgcgccgtcgcctgcgg
gcgatggagcgcgatgggcaactgatctttacgcgtcgccaatgttacgccctgccggaa
cgcctcgatctgctacgcggcaaagtgattggccaccgggatggctatggcttcctgcgc
gtggaagggcagaaagatgatttctacctctccgctgagcagttgaagctctgcctgcat
ggcgatgtcattctggcgcagcctggcggtgcggatcgtaaaggtcgccgcgaggcgcgc
gtagtacgtgtgctcgaaccgcgtaacagccagattgtcggtcgctacttcaccgatgct
ggcgcgggctttgtcgtgccggacgacagccgtctgagctttgatatcctcatcccgcaa
gatcagacgctgaacgcgcgtatgggttctgtggtggtggtggagatcacccagcgtccg
acacgtcgtaccaaagccttgggtaaagtcaccgaagtgctgggcgacaatatgggcacc
ggcctggctgtcgatatggcgctgcgcacccatgaaatcccccatgtttggccggaagcg
gtagaaaagcagatcgccaaactgaaagaagacgtcccggaagaggcgaagaaaggccgc
gtcgatctgcgccaactgccgttagtcaccattgatggcgaagatgcacgcgatttcgac
gatgcggtctactgcgagaaaaaacgcggtggcggctggcgcttatgggtggcgattgcg
gatgtcagctactacgtgcgcccgggcaccgcgctggacaatgaagcgcaccagcgtggc
acctcggtctatttcccatcgcaggtcgtcccaatgctgccggaagtgctgtcaaatggt
ctgtgttcactaaacccgcaggtcgatcgcctgtgtatggtgtgtgaaatgaccatctct
gccaccggcaagctcaccggttataaacactacgaagcggtgatgaattcacacgcccgt
ctgacctacaccaaagtgtggaatattctgcaaggtaacccggagctgcgtgaacaatat
gcgccactggtgaaacaccttgaagagttgcaccgcatgtatcaggtgctggagcaggcg
cgcgagcagcgtggcgggatttcgtttgaaaccgaagaagccaagtttatcttcaacgcc
gatcgtcgtattgagcgggttgagcgcacggtccgtaatgatgcgcacaagctgattgaa
gagtgcatgattctcgcgaacatcgcctcagcgcgctttgtggagaagaatgaagaaccg
gcgctgttccgcgatcacgatcgtcccagcgatgatagcatcaccagtttccgtaccgtg
ctcaacgagctgggcctgagcctgccgggtggcagcaaaccgcagccgatcgattatgct
gagttgctgacgcagatcgccgaccgaccggatgcggaaatgctgcaaaccatgctgctg
cgctcaatgaaacaagcggtgtacgacccggaaaaccgcggccactttggcctggcgctg
gcgtcgtatgcacactttacctcgccgattcgtcgctatccggatctgctactgcaccgc
gccatcaaatatctgctggcgaaagagcagggcgaagagaaaggcaacaccaccgctacc
ggcggttatcactacgatatgcagcagatgttgcaactcggtcagcactgctccatgact
gagcgccgtgcggatgaagcgacccgcgatgttgccgactggctgaaatgcgactttatg
caggatcaggtgggtaatgtcttcaacggcgtgatctccagcgtgactggctttggtttc
ttcgtgcgcctcaacgatctgtttattgatggtctggtgcacgtgtcatcgctggataat
gattactaccgctttgatccggtggggcagcgtctgatcggcgagtccggcgggcgtact
tatcgtctcggtgatgcggtagaagtgcgggttgaagcggtacacatggatgaacgcaaa
atcgacttcgcgctgatttccagcaagcgtgtgccgcggggtgagggtaaaaccgcccgc
gagcgcgagaaacgcggcgctaaaccaccggcgaagcgtcgccgtgatgccggtaaaaac
gtgaatttcgagccagatgccgctttccgcagtgacaagaaaaaacctgcgaaagccaaa
agcgagaaaaaaagcaaaaaagtctcggaaaaaacccgtaaaatcgccgccgccacgaag
gcgaagcgtgcggcgaagaaaaaaaccagcgaagcctga
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