Pantoea sp. At-9b: Pat9b_4949
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Entry
Pat9b_4949 CDS
T01386
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pao
Pantoea sp. At-9b
Pathway
pao02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pat9b_4949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pao03021
]
Pat9b_4949
Transcription machinery [BR:
pao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pat9b_4949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
Sigma70_ECF
HTH_11
HTH_Tnp_4
HTH_23
HTH_24
TnsD
HTH_7
Phage_terminase
HAC6_helical
HLH
HTH_Mga
HTH_36
Motif
Other DBs
NCBI-ProteinID:
ADU72249
LinkDB
All DBs
Position
pPAT9B02:complement(220579..221100)
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AA seq
173 aa
AA seq
DB search
MLPAAESPAAPSLALFYANNHRWLKHWLTGKLRSAFDADDVAQDTFLRVMSGHHLHDIRD
AKSFLCTLAKRVMVDRFRRNALENAYLELLSQLPTAVAPSPEVQQSQLETLQLIDRMLDG
LGHKARQAFLLSQLDNLTYADIATQLSVSVSSVKKYMAKATEHCLLFRLEQGL
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctgctgctgaatcgcccgctgcaccttctctcgccctgttttacgccaataac
caccgctggttgaagcattggctgacgggtaagctgcgttcggcgtttgatgcggatgat
gtcgcgcaggatacgtttttacgcgtgatgtctggccatcatttgcatgatatccgtgat
gccaaatcgtttctctgcaccctcgccaaacgtgtgatggtggatcgtttccgccgcaac
gcgctggaaaatgcgtatctggaattgctcagccaattgcccaccgccgttgccccttca
cccgaggtgcagcaaagccagctggaaaccctgcaacttattgaccggatgttggatggg
ttagggcataaggcgcgtcaggcttttttgctgtcacagctggataatctcacctatgcg
gatatcgctacgcagctctcagtttccgtcagttcggtaaaaaaatacatggcaaaagcc
accgagcactgcctgttgtttcgtcttgaacaggggttgtga
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