Pseudomonas paraeruginosa PA7: PSPA7_0830
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Entry
PSPA7_0830 CDS
T00569
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pap
Pseudomonas paraeruginosa PA7
Pathway
pap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSPA7_0830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pap03021
]
PSPA7_0830 (rpoB)
03400 DNA repair and recombination proteins [BR:
pap03400
]
PSPA7_0830 (rpoB)
Enzymes [BR:
pap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSPA7_0830 (rpoB)
Transcription machinery [BR:
pap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSPA7_0830 (rpoB)
DNA repair and recombination proteins [BR:
pap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSPA7_0830 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
ABR81670
UniProt:
A6UZI1
LinkDB
All DBs
Position
820201..824274
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGET
LNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVTQLEVPFDYLIGR
TIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDN
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
DSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQ
IRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTEITDDYLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gctggcgcaaccaaggagcagttccgcgatatcggtctgcacgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggctaccgtctgggt
gagccggcattcgatgtcaaggagtgcgtgctgcgcggcgtgaccttcgccgtaccgctg
cgcgtgaaagtccgcctgatcatcttcgaccgcgagtcgtcgaacaaggcgatcaaggac
atcaaggaacaagaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtctcccagctgcaccgttccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcggatc
attccttaccgcggctcctggctggacttcgagttcgacccgaaggactgcgtgttcgtc
cgtatcgaccgtcgccgcaagctgccggcctcggtactgctgcgcgcgctcggttacagc
accgaagagatcctcaacgccttctacgcgaccaacgtcttccacatcaagggcgagacc
ctgaacctggagctggtcccgcagcgcctgcgcggtgaagtcgcgagcatcgacatcaag
gacggcagcggcaaggtcatcgtggagcagggtcgccgtatcaccgcccgccacatcaac
cagctggaaaaggctggcgtgacccagctggaagtgccgttcgactacctgatcggccgt
accatcgccaaggcgatcgtgcatccggccaccggcgagatcatcgccgaatgcaacacc
gagctgaccctcgacctcctggccaaggtggccaaggctcaggtcgtgcgcatcgagacg
ctgtacaccaatgacatcgactgcggtccgttcatctccgataccctgaagatcgacaac
accagcaatcagctggaagccctggtcgagatctaccggatgatgcgtccgggcgagccg
ccgaccaaggaagccgccgagaccctgttcggcaacctgttcttcagcgccgagcgttac
gacctgtcggccgtgggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggtccgggcgtcctgagcaaggaagacatcatcgatgtgctcaagaccctggtcgacatc
cgtaacggcaagggcatcgtcgatgacatcgaccacctgggcaaccgccgtgtccgttgc
gtcggcgagatggccgagaaccagttccgcgtgggcctggtgcgtgtcgagcgcgcggtc
aaggaacgcctgtcgatggctgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgccgcgatcaaggagttcttcggttcgagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctccgcgctcggcccg
ggcggtctgacccgagagcgtgcgggcttcgaggttcgtgacgtacacccgacccactac
ggtcgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gcgacctacgcccgcaccaacaagtacggcttcctcgagagcccgtaccgcgtggtcaag
gacagcctggtaaccgacgagatcgtgttcctgtcggcgatcgaagaagccgatcacgtc
atcgcccaggcttcggcgaccctcaacgagaagggccaactggtggacgagctggtggcc
gtgcgtcacctgaacgaattcaccgtgaaggcgccggaagacgtgaccctgatggacgtt
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgcgcactcatgggctcgaacatgcagcgtcaggccgtgccgaccctgcgtgcc
gacaagccgctggtgggcaccggcatggagcgcaacgtggcgcgcgactccggcgtctgc
gtcgtggctcgccgtggcggggtgatcgactcggtcgatgccagccgtgtcgtggttcgc
gtggcggatgacgaggtcgagaccggcgaagcgggtgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacttgcatcaaccagcgtccgctggtgagcaagggtgac
gtggtcgcgcgcggcgacatcctggccgacggtccgtccaccgacatgggcgaactggcc
ctgggccagaacatgcgcgtagcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggtccaggaagatcgcttcaccacgatccacatccaggag
ctgacctgcgtcgctcgcgacaccaagctcggcccagaggaaatcaccgcggacatcccg
aacgtgggcgaggctgcgctgaacaagctggacgaggccggtatcgtctacgtcggcgcc
gaagtgcaggccggcgacatcctggtcggcaaggtcactccgaaaggcgagacccagctg
actcctgaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggat
acttccctgcgtgtgccgaccggcaccaagggcaccgtgatcgacgtacaggtcttcacc
cgcgatggcgtcgagcgcgattcccgcgcgctgtccatcgagaagatgcagctcgaccag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgtgccgccctggtcggtgccaaggccgaaggcggcccggcgctgaagaagggcacggag
atcaccgacgactacctggacggcctcgagcgcggccagtggttcaagctgcgcatggcc
gacgatgcccttaacgagcagctggagaaggcccaggcctacatcagcgatcgtcgtcag
ctcctggacgacaagttcgaggacaagaagcgcaagctgcagcagggcgacgacctggct
ccgggcgtgctgaagatcgtcaaggtctacctggcgatcaagcgtcgcatccagccgggc
gacaagatggccggccgtcacggtaacaagggtgtggtctcggtgatcatgccggtggaa
gacatgccgcacgatgccaacggcaccccggtcgacatcgtcctcaacccgctgggcgta
ccgtcgcgtatgaacgtcggccagatcctcgaaacccacctgggcctcgcggccaagggg
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaaggtcgccgagctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcgaggaaaacctcgacgagctgggc
gacaacgagatcctcgcgctggccaagaacctgcgcggtggcgtaccgatggcgaccccg
gtgttcgatggcgccaaggaacgcgagatcaaggccatgctgaagctggccgacctgccg
gaaagcggccagatgcgtctgttcgacggtcgtaccggcaaccagttcgagcgtccgacc
accgtcggctacatgtacatgctcaagctgaaccacctggtggacgacaagatgcacgcc
cgttccaccggctcgtacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgcttcggtgagatggaggtgtgggcgctggaagcctatggcgcggcgtac
accctgcaagaaatgctgacggtcaagtcggacgacgtgaacggccggaccaagatgtac
aagaacatcgtggacggcgatcaccgcatggaggccggcatgcccgagtccttcaacgtt
ctgatcaaagagattcgttcgctcggcatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
