Pseudomonas paraeruginosa PA7: PSPA7_2157
Help
Entry
PSPA7_2157 CDS
T00569
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pap
Pseudomonas paraeruginosa PA7
Pathway
pap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSPA7_2157 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pap03400
]
PSPA7_2157 (mfd)
Enzymes [BR:
pap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSPA7_2157 (mfd)
DNA repair and recombination proteins [BR:
pap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSPA7_2157 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
ERCC3_RAD25_C
AAA_30
DUF7267
Motif
Other DBs
NCBI-ProteinID:
ABR82229
UniProt:
A6V394
LinkDB
All DBs
Position
complement(2210938..2214384)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPSLPASAGKQHWGNLPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLRHGVLVVPISTALHRLAPT
RFLLGSSLVLDIGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSELPF
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGFRGRFRERFDVDYR
RCPIYQDLASGLTPSGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEQAAEQFWGDVRS
RYEDRRVDPERPLLPPAEVFLPVEDCFARLKNWPRVVASQEDVEPGVGRERFPALPLPNL
AIEAKAAEPLAALRRFIEEFPGRVLFCAETAGRREVLLELLARLKLRPEEVDGWPAFLAS
QARLAISIAPLDEGLLLDHPALALVAESPLFGQRVMQRRRREKTRDGGDAVIKNLTELRE
GAPVVHIDHGVGRYLGLITLEVDNQQAEFLMLQYAEDAKLYVPVANLHLIARYTGADDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFKDPQADYATFSAGFPF
EETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTT
LLAQQHYNSFRDRFADWPVNVEVMSRFKSAKEVESAARQLAEGKIDILIGTHKLLQEDVR
FANLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP
PARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEARIG
IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPEDYLPD
VHARLILYKRIANAADEDGLRELQVEMIDRFGLLPDPAKNLMRLTLLKLQAEKLGILKVD
AGPQGGRIEFAADTQVDPLVLIKLIQGQPNRYKFEGATLFRFQVPMERPEERFNTLEALF
ERLAPQTT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccaagcctgccggccagcgccggcaagcaacactggggcaac
ctccccggtgccgcgctgagcctggctgtcgccgaggccgccagttccgccaagcgcttc
accctgctgctgaccgccgacagccagaatgccgaacgcctggaacaggaactacggttc
ttcgcccccgacctgccggtactgcatttccccgattgggaaaccctgccctacgacgtc
ttttcgccgcaccaggacatcatttcccagcgtatcgccgctctctaccagttgccacag
ctcaggcacggcgtgctggtggtgccgatctccacggccctgcaccgcctggcgcccacg
cgcttcctgctcggcagcagcctggtcctggatatcggccagaaactcgacgtcgagcgg
atgcgcctgcgcctggaaggcgccggctaccgctgtgtcgataccgtctacgaacacggc
gagttcgccgttcgcggcgcgctgatcgacctgttcccgatgggcagcgagctgcccttc
cgtatcgatctgttcgatgacgagatcgagaccctgcgcaccttcgacccggagacccag
cgctccatcgacaaggtcgagtcgatccgcctgctgccggcgcgcgagttccctctcaac
aaggaagcggtcaccggcttccgcggccgcttccgcgagcgcttcgacgtcgactaccgg
cgctgcccgatctaccaggatctcgccagcggtttgacaccctcgggaatcgagtactac
ctgccgctgttcttcgaggaaaccgccaccctcttcgactacctgccgcaggacacccag
gtgttctccctgcccggtatcgagcaggccgccgagcagttctggggcgacgtgcgcagc
cgctacgaggaccgccgggtcgatccggaacgcccgctgctgccgccggcagaagtattc
ctgccggtggaagactgcttcgcccgactgaagaactggccacgggtggtcgccagccag
gaggacgtcgagccgggcgtcggccgcgagcgcttcccggccctgccgctgccgaacctg
gcgatcgaagccaaggccgccgaaccgctggccgcgctgcgccggttcatcgaggaattc
cccggccgcgtactgttctgcgccgaaacggccggacgccgggaggtgctgctggagctg
ctggcccggctgaagctgcgtcccgaggaagtcgacggttggccggccttcctcgccagc
caggcacgcctggcgatcagcatcgcgccgctggacgagggtctgctgctggaccacccg
gcactcgccctggtcgccgaaagcccgctgttcggccagcgcgtcatgcagcgccggcgc
cgggaaaagacccgcgacggcggcgacgcggtgatcaagaacctcaccgagctgcgcgaa
ggcgcaccagtggtgcacatcgaccatggcgtcggccgctacctgggcctgatcaccctc
gaggtggacaaccagcaggcggaattcctcatgctgcaatacgccgaggacgccaagctc
tacgtgccggtcgccaacctgcacctgatcgcccgctacaccggcgccgacgacgccctc
gcgccgctgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggccgccgag
caggtccgcgacgtcgctgccgagctgctcgacatctacgcccgccgcgcggcccgcgaa
ggcttcgccttcaaggacccgcaggccgactacgcgaccttctccgccggcttccccttc
gaggaaaccccggaccagcagagcgccatcgaggcggtggtggccgacatgctggcgccc
aggccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatg
cgcgcggcgttcgtcgccgtgcacagcggcaagcaggtggcggtgctggtgccgaccacc
ctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtcaac
gtcgaggtgatgagccgcttcaagagcgccaaggaagtcgagagcgccgcgcgacagttg
gccgaaggcaagatcgacatcctcatcggtacccacaagctgctccaggaagacgtcagg
ttcgccaacctgggcctggtcatcatcgacgaggaacaccgtttcggagtgcgccagaag
gaacagctcaaggcgctgcgcagcgaggtggacatcctcaccctcaccgccacgccgatc
ccgcgtaccctcaacatggccgtctccggcatgcgcgacctgtcgatcatcgccaccccg
ccggcgcgccgcctgtcggtgcgtaccttcgtcatggagcagcagaacgcggtgatcaag
gaagccctgctccgcgagctgctgcgcggcggccaggtgtactacctgcacaacgaagtg
aagaccatcgagaagtgcgcccgcgacctcgccgagctggtcccggaagcgcgcatcggc
atcggccacggacagatgcacgagcgcgagctggaacaggtgatgagcgacttctaccac
aagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagc
gccaacaccatcctcatcgagcgcgccgacaagttcggcctggcccagttgcaccagttg
cgcggccgcgtcggtcgcagccaccaccaggcgtacgcctacctgctgacgccgccgcgc
cggcagatgaccccggatgccgagaaacgcctggaagccatcgccaacgcccaggacctg
ggcgccggcttcgtcctcgccacccatgacctggagatccgcggcgccggcgaactgctc
ggcgacgggcagagcgggcagatccaggcggtcggtttcaccctctacatggaaatgctc
gagcgcgcggtgaaggccatccgcaagggcgagcagccgaacctcgagcagccgctgggc
ggcggcccggaggtcaacctgcgggtaccggcgctgatccccgaggactacctgcccgac
gtgcacgcccggctgatcctctacaagcgcatcgcaaacgccgccgacgaggacggcctg
cgcgaactgcaggtggaaatgatcgatcgattcggcctgctgcccgatccggcgaagaac
ctgatgcgtctgacgcttctgaaattgcaggcggaaaagcttggaatcctcaaggtcgat
gccggaccacagggtggtcgtatagaattcgccgccgatacccaggtcgatccgctggtc
ctgatcaagctgatccagggccagccgaaccgctacaagttcgaaggcgccaccctgttc
cgcttccaggtacccatggaacgaccggaagaacgcttcaataccctggaggcgctgttc
gagcgcctcgcaccgcaaaccacctaa
DBGET
integrated database retrieval system
