Pseudomonas paraeruginosa PA7: PSPA7_3173
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Entry
PSPA7_3173 CDS
T00569
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pap
Pseudomonas paraeruginosa PA7
Pathway
pap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSPA7_3173 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pap03400
]
PSPA7_3173 (ligD)
Enzymes [BR:
pap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSPA7_3173 (ligD)
DNA repair and recombination proteins [BR:
pap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSPA7_3173 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABR80822
UniProt:
A6V648
LinkDB
All DBs
Position
complement(3284226..3286769)
Genome browser
AA seq
847 aa
AA seq
DB search
MPSKPLAEYARKRDFRQTPEPSGRKRRKDGDGLLRYCIQKHDASRLHYDFRLELDGTLKS
WAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPKGHYGAGDVIVWDRGAWTPLDDPRE
GLEKGHLSFLLDGEKLSGRWHLIRTNLRGKQPQWFLVKSKDDEARSLDRFDVLKERPDSV
LSERTLVPRRGEAATPAARPARRGKAGKAGKGGGKTPMPEWIAPELASLVEQPPHGQWAY
ELKLDGYRLMSRIEDGHVRLLTRNGHDWSERLPHLKKALAGLGLERSWLDGELVVLDEEG
RPDFQALQNAFEEGHGENILYFLFDLPYHEGEDLRDVALEERRARLEALLDGQDEDPLRF
SATLAENPRDLLASACRLGLEGVIGKRLGSVYRSRRSNDWIKLKCQLRQEFVIVGYTEPK
GSRRHIGALLLGLYSPDEERRLRYAGKVGTGFTAASLKKVHERLAPLAINSSPLAKVPPA
RETGVVQWVRPERLCEVSYAQMTRGGIIRQAVFHGLREDKPAREVTGERPAGPPPARGAR
KAGSASGASRAATAGVRISHPRRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVR
GPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTW
NASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLV
PLERRHGWDEVKAFAQAISQHLARLMPERFSAVSGPRNRVGRIFVDYLRNSRGASTVAAY
SVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRLSAAM
RRQLGRG
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcaagccgctcgccgagtacgcgcgcaagcgcgatttccgccagaccccggag
cccagtgggcgcaagcgccgcaaggacggcgacggcctgctccgctattgcatccagaag
cacgacgccagccggctgcactacgatttccgcctggaactggacggcaccctgaagagc
tgggcggtgcccaagggaccatgcctcgacccggcggtgaaacggctcgcggtgcaggtg
gaggaccacccgctggactacgccgacttcgaaggcagcatacccaagggccactacggc
gccggcgacgtgatcgtctgggaccgtggcgcctggacgcctctagacgacccgcgcgaa
gggctggagaaaggtcatctcagcttcctcctcgacggcgagaaactctccgggcgctgg
cacctcatccgcaccaacctgcgcggcaagcagccccagtggttcctggtcaagtccaag
gacgacgaggcgcgcagcctggatcgcttcgatgtgctgaaggaacgtcccgacagcgtg
ctcagcgagcgcacgctggtgccccgccgcggcgaagccgccacgcccgcggccaggccc
gcgcgacgcggcaaggccggcaaagccggcaagggcggcgggaagacgccgatgcccgag
tggatcgcccccgaactggccagcctggtcgagcagccgccgcacgggcaatgggcctac
gagctcaagctggacggctaccggctgatgagccgcatcgaggacggccacgtgcgcctg
ctgacccgcaacggccacgactggagcgaacgcctgccgcacctgaagaaggccttggcc
gggctcggccttgagcgcagttggctggacggcgagctggtggtcctcgacgaggagggc
cggccggacttccaggccctgcagaacgccttcgaggagggccacggcgaaaacatcctg
tatttccttttcgacctgccgtatcacgaaggcgaggacctgcgcgatgtcgccctggaa
gagcgccgcgcgcgcctggaggcgctgctggacgggcaggacgaagaccccctgcggttc
tccgcgacgctcgcggaaaacccccgcgacctgctggccagcgcttgcaggctcggcctc
gaaggcgtgatcggcaagcgcctgggcagcgtctaccgctcgcgccgcagcaacgactgg
atcaagctcaagtgccagttgcgccaggagttcgtgatcgtcggctacaccgagccgaag
ggctctcgccggcacatcggcgccttgcttctcggcctctacagcccggacgaggaacgc
cggctgcgctacgccggcaaggtcggcaccggcttcaccgccgccagcctgaagaaggtc
catgagcgcctggcgcccctggcgatcaattccagcccgctggcgaaggtaccgccggcg
cgcgagaccggcgtggtgcagtgggtgcggccggaacgactgtgcgaggtttcctatgcg
cagatgacccgtggcgggatcatccgccaggcggtgttccacggtttgcgcgaagacaaa
ccggcgcgcgaggtgaccggcgaacgtccggccggcccgccgccggcgcgcggcgcgcgc
aaggccgggagcgcgagcggcgcctcgcgggcggccaccgccggggtacgcatcagccat
ccgcggcggctgatcgatccatcgatccaggccagcaagctggaactcgccgagttccat
gcgcgctacgccgacctgctcctgcgcgacctgcgcgagcgcccggtgtcgctggtccgc
ggccccgatggcatcggcggcgaactgttcttccagaagcacgcggcgcgcctgaagatc
cccggtatcgtccagctcgacccggcgctcgatcctggccatccgccgcttctgcagatc
cgcagcgccgaggcgctggtcggcgcggtgcagatgggcagcatcgaattccacacctgg
aacgccagcctggccaacctggagcggcccgaccgcttcgtcctcgatctcgatccggac
ccggcgctgccgtggaaacgcatgctcgaggcgacccaactgagcctcacgctgctcgac
gagctgggcctgcgtgccttcctcaagaccagcggcggcaagggcatgcacctgctggta
ccgctggagcgccggcatggctgggacgaggtgaaggctttcgcgcaggccatttcccag
cacctggcgcggctgatgccggagcgcttctcggcggtttccgggccgcgcaaccgggtc
ggcaggatcttcgtcgactacctgcgcaacagccgcggcgccagcaccgtggccgcctac
tcggtacgcgcccgcgaagggctgccggtgtcggtgccggtgttccgcgaggagctcgac
tcgctgcagggcgccaaccagtggaacctgcgcagcctgccgcagcgcctcgatgaactc
gccggcgacgatccctgggccgactatgccggcacccgccaacgcctcagcgccgccatg
cgccgccagctcggccgcggctga
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