Pseudomonas paraeruginosa PA7: PSPA7_5225
Help
Entry
PSPA7_5225 CDS
T00569
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pap
Pseudomonas paraeruginosa PA7
Brite
KEGG Orthology (KO) [BR:
pap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pap03016
]
PSPA7_5225
Enzymes [BR:
pap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PSPA7_5225
Transfer RNA biogenesis [BR:
pap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PSPA7_5225
Prokaryotic type
tRNA splicing ligases
PSPA7_5225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CHDCT2
DUF4514
DUF4402
Motif
Other DBs
NCBI-ProteinID:
ABR85870
UniProt:
A6VBX2
LinkDB
All DBs
Position
5371401..5372615
Genome browser
AA seq
404 aa
AA seq
DB search
MKDMNILEVAGGKPIKLWTQGVPVEEEARRQLMNTAKMPFIFKHLAVMPDVHLGKGSTIG
SVIPTLGAIIPAAVGVDIGCGMIAARTSLVAADLPDNLHGLRSAIEQAVPHGKTFGRRDR
GAWHEVPDAADQAWKALAGRFRAITDKYPRLEKTNNRQHLGTLGTGNHFIEVCLDEADRV
WFMLHSGSRGVGNAIGNLFIELAKADMRQHIANLPDKDLAYFEEGSRHFDDYVEAVGWAQ
DFARQNRALMMHAVIEAARQVIRKPFEANLEAVNCHHNYVQKERHFGQEVLVTRKGAVSA
QKGQLGIIPGSMGAKSFIVRGLGNQEAFCSCSHGAGRTMSRTQAKKVFSVEDQIRATAHV
ECRKDADVIDEIPMAYKDIDRVMEAQRELVEVLHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatgaacatcctcgaagtcgccggcggcaagccgatcaagctctggacccag
ggcgtcccggtggaggaagaagcgcgccggcaactgatgaacacggcgaagatgccgttc
atcttcaagcacctggcggtgatgcccgacgtccacctgggcaagggttcgaccatcggc
agcgtgatccccaccctcggcgcgatcatcccggcggcggtgggcgtggacatcggttgc
gggatgatcgccgcgcggacctcgctggtcgccgccgatctgccggacaacctgcacggt
ctgcgcagcgccatcgagcaggcggtgccccacggcaagaccttcggccgtcgcgaccgc
ggcgcctggcatgaggtgccggacgccgccgaccaggcctggaaggcgctcgccggccgc
ttcagggcgatcaccgacaagtacccgcggctggagaagaccaacaaccgccagcacctg
ggtaccctcggcaccggcaaccacttcatcgaggtctgcctggacgaggccgatcgcgtc
tggttcatgctgcacagcggttcgcgcggggtcggcaacgccatcggcaacctgttcatc
gaactggccaaggccgacatgcgccagcacatcgccaacctgccagacaaggacctggcc
tacttcgaggagggcagccggcacttcgacgactacgtggaagcggtcggctgggcccag
gacttcgcccggcagaaccgcgcgctgatgatgcacgcggtgatcgaggcggcgcgccag
gtgatccgcaagccgttcgaggccaatctcgaagcggtcaactgccaccacaactacgtg
cagaaggaacgccacttcggccaggaggtgctggtcacccgcaagggcgcggtgtccgcg
cagaagggccagctcggcatcatccccggctcgatgggcgcgaagagcttcatcgtccgc
ggcctcggcaaccaggaagcgttctgctcgtgcagccacggggccgggcggaccatgagc
cggacccaggcgaagaaggtcttcagcgtcgaagaccagatccgcgccaccgcccacgtc
gaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcctacaaggacatcgac
cgggtcatggaagcccagcgcgagctggtggaagtgctgcacaccctgcgtcaggtggtg
tgcgtgaaaggatga
DBGET
integrated database retrieval system
