Paraburkholderia sp. PGU19: PPGU19_017890
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Entry
PPGU19_017890 CDS
T11835
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
papg Paraburkholderia sp. PGU19
Pathway
papg03030
DNA replication
papg03430
Mismatch repair
papg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
papg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPGU19_017890 (holB)
03430 Mismatch repair
PPGU19_017890 (holB)
03440 Homologous recombination
PPGU19_017890 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
papg03032
]
PPGU19_017890 (holB)
03400 DNA repair and recombination proteins [BR:
papg03400
]
PPGU19_017890 (holB)
Enzymes [BR:
papg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPGU19_017890 (holB)
DNA replication proteins [BR:
papg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPGU19_017890 (holB)
DNA repair and recombination proteins [BR:
papg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPGU19_017890 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA_16
NACHT
TsaE
Motif
Other DBs
NCBI-ProteinID:
BCF97220
LinkDB
All DBs
Position
1:complement(1952365..1953423)
Genome browser
AA seq
352 aa
AA seq
DB search
MIYPWQTDDWNRLQQLRAHWPHALLLHGQAGIGKLRFAQHLAQGLLCESALPDGQPCDTC
AACTWFKQGNHPDYRIVLPEALAAEAGFTSAAADEKAEKANADADEGGKKTRTPSKEIKI
EQVRALLDFCGVGSHRGGVRVVVLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDR
LLPTIISRCRQWPMTTPSPQAATAWLAQQGVDDAPGLVAEAGGAPLAALALASDENRPLR
DWTLKQLAAGPNCDAFACGETLQKLPVPLVLGWLQRWMYDLLAQSTVGTTGTPRYFPAAS
AALSRCASQADANGFARFMRTVARQRAVENHPLNARLVFEELFLGYRDLFVQ
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgatttatccgtggcaaaccgacgactggaaccgcctgcagcaattgcgcgcccactgg
ccgcatgcgctgctgcttcacgggcaggccggcatcggcaagctgcgctttgcccagcat
ctggcgcagggcctgctgtgcgaatcggcgttgccggacggccagccatgcgacacctgc
gcggcgtgcacatggttcaaacagggcaatcacccggactaccggatcgtgctgccggag
gcgctcgctgcggaagcgggcttcaccagcgccgccgccgatgaaaaggccgaaaaagcg
aacgcagacgccgacgaaggcggcaagaaaacgcgcacgcccagcaaggaaatcaagatc
gagcaggtgcgggcgctgctggacttttgcggcgtcggctcgcatcgcgggggcgtgcgc
gtcgtcgtgctgtatcccgccgaggcgctgaacgtcgcggccgccaatgcgctgctgaaa
acgctcgaggagccacctgctggcgtcgtgttcctgatggtgtcggcgcggatcgaccgg
ctgctgccgaccatcatcagccgttgccgtcaatggccgatgacgacgccgtcgccgcag
gccgccactgcgtggctcgcgcaacagggcgtcgatgatgcgccgggcctggtcgcggaa
gcaggcggcgcgccgcttgcggcgctcgcccttgcgagcgacgaaaaccgcccgctgcgc
gactggaccctgaaacaactggcggccggcccgaactgcgatgcgttcgcgtgcggcgag
acgttgcagaagttgcccgtgccgctcgtgctcggctggctgcagcgctggatgtacgat
ctgctcgcccagtccaccgtgggcacgacgggcacgccgcgttatttcccggcggcgtcg
gcggcgctctcgcggtgcgcgtcgcaggccgacgcgaacggtttcgcgcgcttcatgcgg
acggtcgcgcggcaacgcgcggtcgaaaaccatccgctcaacgcgcggctcgtgttcgaa
gaactgtttctcggctatcgcgacctgttcgtccagtag
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