Paraburkholderia sp. PGU19: PPGU19_018790
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Entry
PPGU19_018790 CDS
T11835
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
papg Paraburkholderia sp. PGU19
Brite
KEGG Orthology (KO) [BR:
papg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
papg03009
]
PPGU19_018790 (rlmD)
Enzymes [BR:
papg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PPGU19_018790 (rlmD)
Ribosome biogenesis [BR:
papg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PPGU19_018790 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_ANTKMT
Methyltransf_23
TRM5-TYW2_MTfase
RrnaAD
Cons_hypoth95
MTS
TRAM
Methyltransf_15
Methyltrans_SAM
Methyltransf_11
PCMT
Methyltransf_32
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
BCF97310
LinkDB
All DBs
Position
1:complement(2058543..2060030)
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AA seq
495 aa
AA seq
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MSFVYNLVFGPTFTQSVRKSQVSETVPHIGKTRSSRKSKQAREDAAAGPFKAPELDIQSL
DMEARGVGRTVTEDGSPGKVIFVEGALPGERVTYSSYRKKPSFEQAQVVDILKESVIRTR
PQCKFFGICGGCSMQHLDVRAQIAVKQRVLEDNLMHLSKLRPETVFRPIHGPSWGYRYRA
RLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSDMLVPLRHMVEALSIRDRMPQ
IELAVGSSVTALVLRVLEPINEADEQVLRDFADQHNVQFWLQPKGPDTVYPFYPLDAQLD
YTLPEYGIRMPFRPTDFTQVNHQINRVLVGRALRLLAPAKTDRVLDLFCGIGNFTLPLAR
ISREVVGIEGSEVLTSRALDNAKENGVDSHTSFASRNLFEVTADDIRALGHFDKYLIDPP
REGALAVSKALADIAQSGEGPLPKRIVYVSCNPATLARDAGLLVHEAGYRLKGAGVVNMF
PHTSHVESIALFERD
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgttcgtctacaatctcgtgtttggtcccacttttacacagtctgtcaggaagtcg
caggtgtccgaaactgtcccccacattggtaaaacgcgctcgtccagaaagagcaagcag
gcgcgcgaagacgcagccgctggccccttcaaggcgcccgaactcgatatccagtcgctc
gacatggaagcgcgcggcgtcggccgcaccgtcacggaagacggctcgcccggcaaggtc
atcttcgtcgagggcgcgctgcccggcgaacgcgtcacctattcgagctaccggaagaag
ccgagcttcgaacaggcgcaggtcgtcgatatccttaaagagagcgtgatccgtacccgc
ccgcagtgcaagttttttggcatctgcggcggttgttcgatgcagcatctcgacgttcgc
gcgcagatcgccgtcaagcagcgcgtgctcgaagacaatctgatgcatctgtcgaagctg
cgcccggaaaccgtgttccggccgatccacggtccgtcgtggggctaccgctaccgcgcg
cgtctgaccgtgcgcaacgtcgcgaagaagggcggcgtgctggttggtttccacgaaaag
aagagcagctacgtcgccgatatgacgagctgcgaagtgctgccgccgcacgtgtccgac
atgctggtgccgctgcggcacatggtcgaagcgctgtcgattcgcgaccgcatgccgcag
atcgaactcgctgtcggctcgtcggtgacggcgctcgtgctgcgcgttctggagccgatc
aacgaggccgacgaacaggtcctgcgcgatttcgccgatcagcacaacgtccagttctgg
ctgcagccgaagggtccggataccgtctatccgttctacccgctcgatgcgcaactcgat
tacacgctgcccgaatacggcatccggatgccgttccgtcccaccgacttcacgcaggtc
aatcaccagatcaaccgtgtgctggttggccgcgcgctgcggttgctggcgcccgcgaag
acggaccgcgtgctcgatctgttctgcggcatcggcaactttacgctgccgctcgcgcgg
atctcgcgcgaagtggtcggtatcgaaggcagtgaagtgctgacttcgcgcgcgctcgac
aacgcgaaggaaaacggcgtcgacagccacacgtcgttcgcgtcccgcaacctgttcgaa
gtcaccgccgacgacattcgcgcgctcggtcacttcgacaagtacctgatcgatccgccg
cgcgaaggcgcgctcgcggtgtcgaaggcgctcgcggacattgcgcagagcggcgaaggg
ccgttgccgaagcgcatcgtctacgtatcgtgcaacccggctacgctcgcgcgtgatgcg
ggtctgctcgtgcacgaagcgggctaccggttgaagggtgcgggcgtcgtgaatatgttc
ccgcacacgtcgcacgtcgagtcgattgcgctcttcgagcgtgactga
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