KEGG   Paraburkholderia sp. PGU19: PPGU19_018950
Entry
PPGU19_018950     CDS       T11835                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
papg  Paraburkholderia sp. PGU19
Pathway
papg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:papg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PPGU19_018950 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:papg03021]
    PPGU19_018950 (rho)
   03019 Messenger RNA biogenesis [BR:papg03019]
    PPGU19_018950 (rho)
Transcription machinery [BR:papg03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PPGU19_018950 (rho)
Messenger RNA biogenesis [BR:papg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PPGU19_018950 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB S1CSD-TOTE-2 ATPase_2 AAA_25 AAA_22 Phostensin_N
Other DBs
NCBI-ProteinID: BCF97326
LinkDB
Position
1:2076182..2077447
AA seq 421 aa
MHLSELKTLHVSQLIEMANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDMMRRGG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcatttatccgagcttaagactctgcacgtgtcccaattgatcgagatggccaatggt
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaactgatgttcgccattctaaaa
aagcgcgccaaaacgggcgaaacgatcttcggtgacggcaccctcgaagtgctgccggac
ggcttcggcttcctgcgctcgccggaaacctcgtatctcgccagcacggacgacatctac
atctccccgtcgcagatccgccgcttcaacctgcatacgggcgacaccatcgaaggtgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtcgacaaggtcaac
ggccagccgccggaagcctcgaagcacaagatcatgttcgagaatctgacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgaaatgcgtggcgaggaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctcgtcgcgtcgccg
aagtccggcaagaccgtgatgcttcagcacatcgcgcatgcgatcaagcagaaccacccc
gacgtgatcctgttcgtgctgctgatcgacgaacgtcctgaagaagtgacggaaatgcag
cgctcggtggcgggcgaagtcattgcgtccaccttcgacgaaccggccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaagccaagcgcctcgtcgaaatgaagaacgacgtc
gtgattctgcttgactcgatcacgcgtctcgcgcgcgcctacaacacggttgtcccggca
tcgggcaaggtgctgacgggcggtgtcgacgcgaacgcgctgcaacgtccgaagcgcttc
tttggcgcggcccgtaacatcgaggaaggcggttcgctgaccatcatcggcacggcgctg
atcgaaacgggcagccgcatggacgacgtgatctacgaagagttcaagggcacgggcaat
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtctatccgtcgatcaacctg
aacaagtccggcacgcgtcgcgaagaactgctcatcaagcccgagatcctgcaaaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaagcaatggaattcctgctc
gacaagatccgccagacgaagaacaacgccgagttcttcgacatgatgcgtcgcggcggc
ggctaa

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