Paraburkholderia sp. PGU19: PPGU19_023330
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Entry
PPGU19_023330 CDS
T11835
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
papg Paraburkholderia sp. PGU19
Pathway
papg03030
DNA replication
papg03430
Mismatch repair
papg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
papg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPGU19_023330 (dnaE)
03430 Mismatch repair
PPGU19_023330 (dnaE)
03440 Homologous recombination
PPGU19_023330 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
papg03032
]
PPGU19_023330 (dnaE)
03400 DNA repair and recombination proteins [BR:
papg03400
]
PPGU19_023330 (dnaE)
Enzymes [BR:
papg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPGU19_023330 (dnaE)
DNA replication proteins [BR:
papg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPGU19_023330 (dnaE)
DNA repair and recombination proteins [BR:
papg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPGU19_023330 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
BCF97764
LinkDB
All DBs
Position
1:complement(2557681..2561241)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDVVDSAAKDGQGALALTDLGNAFGLVRFYQEARGK
GVKPIAGCDVWITNPDDRDKPSRLLLLVKNKTGYLNLCELLSKAWLTNQYRGRAEVETPW
LEGGFAEGLLALSGAQHGDVGMALAAGNEEAARRNAQRWATIFPNGFYIELQRGGQLGAE
AYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDMLANPRRQKRFTTDQY
FRTQAEMVAMFADIPSAVANTIEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLEQLFPEQAERDAQRETYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKESWSLAQVPLDDPASFS
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREV
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
IFAEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEFMAA
NMSLAMDDTDKVKILFEDCLANKMAVLPPDINMSAYRFEPVAEADGKRSRTIRYGLGAIK
GSGQNAIEEILRAREEGLFIDIFDFCNRIDRRIVNRRTIEALIRAGAFDSLHENRAQLIA
SVSLAMEAADQASANAMQAGLFDMGDAPSQGHELIDEPAWPEKRRLQEEKTALGFYLSGH
LFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEVT
VFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRYAQAVKVQMN
GNANALALRSVLEAYRAKPEDAEVAAPAPAARGGGRGGFGGGGDSGGRSQRPSTPMPNGL
AVQIVYRSDNAEGEVRLGDAWRVRPTDELLAALRSEFSGSAIEIVY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgcttcgtccatctccgcgttcactccgaattctcgattgccgatggc
atcgtgcgtatcgacgacgtcgtcgattccgctgccaaagacggtcagggcgcgctcgcg
cttaccgatctcggcaatgcattcggcctcgtccgtttctatcaggaagcccgtggcaaa
ggggtcaaacccattgccggctgcgacgtctggatcacgaatcccgacgaccgcgacaag
ccttcgcgacttctgctgctggtcaaaaacaagactggctatctgaatctttgcgaactg
ctgtccaaggcgtggctgacgaaccagtatcgcgggcgcgcggaagtggaaacgccgtgg
ctcgaaggcggattcgccgaagggctgctcgcgctgtcaggcgcgcagcatggcgatgtc
ggcatggcgctcgcggcgggcaatgaagaagccgcaagacgcaatgcgcagcgctgggcg
acgatcttcccgaacggtttctatatcgaactgcagcgcggcggccagctcggcgcggag
gcgtatgtgcagcaggcggttgctctggcggcgtcgctgaagctgcccgtggttgccacg
catccgctgcagttcatgacgcccgacgacttcaccgcgcacgaagcgcgcgtgtgtatt
tcggaaggcgatatgctcgcgaatccgcgtcgccagaagcgcttcacgactgaccagtat
ttccgcacgcaagccgagatggtcgcgatgttcgccgacattccctcggcggtggccaac
accattgaaatcgcgaagcgctgcaatctgacgctcgaacttggcaagcccaagctgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctggtgcagttgtcgaaggaa
ggcctggaaaagcgcctcgagcaattgttccccgagcaggccgaacgcgacgcgcagcgc
gaaacgtactacgcgcggctcgacttcgaatgcggcacgatcatcaagatgggctttccc
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaatggcgtgccggta
ggaccgggccggggctcgggcgcgggttcgctggtcgcgtacgcgctcggcattaccgac
ctcgatccgctgcgctacaacctgctgttcgaacgttttctgaatccggagcgggtgtcg
atgcccgacttcgacatcgacttctgtcagcacggccgggatcgcgtgatccagtacgtg
aaggagaagtacggcgcggacgccgtgtcgcagatcgccacgttcggcacgatggccgct
aaggcggccgtgcgtgatatcgggcgtgtgctcgatctcggttatatgttcacggacggc
gtcgcaaagctgattccgttcaagcccggcaagcacgtcacgatcgccgacgcgatgaag
gaagagccgctgctgcaggagcgcttcgacaacgaagacgaagtgcatcagctgctcgaa
ctcgcgcagcgcgtagaaggcctgacgcgaaacgtcggcatgcacgcgggtggcgtgctg
atcgcgcccggcaaactgacggatttctgtccgctctatacgcagggcgatgaaagcggc
gtcgtgagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ttgggtctgaccacgctgaccattctcgactgggccgagcgctacattcgccgtctcgat
ccgtcgaaggaaagctggtcgctcgcgcaggtgccgctcgacgaccccgcgtcgttctcg
atcctcaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggcatgcaaggc
atgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctggtggcgttgtat
cgtccgggcccgatggacctgattccgagcttctgcgcgcgtaagcacggccgcgaagtg
gtggagtatccggacccgcgcgtcgaacctgttctgaaagagacctacggcatcatggtc
taccaggagcaggtgatgcagatggcgcagatcatcggtggctactcgctgggcggcgct
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggaaatggcgaagcaccgcgag
attttcgcggaaggcgccgcgaagaacggtctgacacgcgagaaggcggacgaaaccttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggctgcctatgcg
ctgctcgcgtaccacaccgcgtggctcaaggcacaccatcccgccgaattcatggcggcc
aatatgtcgctcgcgatggacgacacggacaaggtcaagatcctgttcgaagactgcctc
gcgaacaagatggccgtgctgccgcccgacatcaacatgtccgcgtaccgcttcgagccg
gtcgcggaagccgacggcaagcgttcgcgcacgatccgctacggtctcggcgcgatcaag
ggcagtggccagaacgcgatcgaagaaatcctgcgcgcgcgcgaagaaggtttgttcatc
gatatcttcgatttctgcaatcggatcgatcgccgtatcgtcaatcgccgcacgatcgaa
gcgctgattcgcgcaggcgcgttcgattccttgcacgaaaaccgcgcgcaactgatcgcg
tcggtgtcgctcgcaatggaagccgcggatcaggcgagcgccaacgcgatgcaagcgggc
ctgttcgacatgggcgatgcgccgtcgcaaggccatgaactgatcgacgaacccgcgtgg
ccggaaaagcgccgtctgcaggaagagaagacggcgctcggcttctacctgtcgggccat
ctgttcgacgcctacaaggacgaagtgcgccgcttcgtgcgtcagaagatcggcgaactg
aaggaagggcgcgacaagctggtggcgggcgtgatcgtgtcgctgcgtacgcagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgacggcacaggccagtgcgaagtgacc
gtcttcaacgaacaattcgaggcgcacaagcagctgttcaaggaagacgaactgctcgtc
gtacaaggtcaggcgcgcaacgacgcgttcacgggtggcatccgctttaccgtcgatacg
ccgatggacctcggccgtgcgcgcacgcgttacgcgcaggcggtgaaggtgcagatgaac
ggcaatgcgaatgcgctcgcgctgcgctccgtgctcgaagcctatcgcgcgaagccggaa
gacgcggaagtggccgcgccggcgcccgctgcacgaggcggcggtcgtggcggcttcggc
ggtggcggcgattcgggtgggcgctcgcaacgtccatccacgccaatgccgaacgggctt
gccgtgcagatcgtctatcgcagcgacaacgcggaaggcgaggtgcggcttggcgatgcg
tggcgcgtgaggccgacggacgaactgctcgccgcgttgcgcagcgagttttcgggcagc
gcgatcgagattgtgtattga
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integrated database retrieval system
