Pandoraea apista: SG18_02925
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Entry
SG18_02925 CDS
T03588
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_02925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_02925
03400 DNA repair and recombination proteins [BR:
papi03400
]
SG18_02925
Enzymes [BR:
papi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SG18_02925
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG18_02925
DNA repair and recombination proteins [BR:
papi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SG18_02925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
NepR
Motif
Other DBs
NCBI-ProteinID:
AJE97385
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All DBs
Position
2612366..2614174
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AA seq
602 aa
AA seq
DB search
MASALEVLRTVFGYNAFRGDQAAIVDHVADGGDALVLMPTGGGKSLCYQIPALLRPGIGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLSFDEALDTERRAARGELDLLYVAPERLLTE
RFLDLLDRLDERGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPRVPRIALTATAD
NATRDEIQTRLGLTEARLFVSSFDRPNIRYEIVDRDNPRKQLLAFLARHRGEAGIVYCLS
RKKVEETAAWLETQGIPALPYHAGLDAEVRRTHQQRFLREEGLVMSATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMAYGLNDVVVHRSRIDESNAPDLQKRIE
RQKLDALLGYCEAPRCRRTVLLAYFGEASEPCGNCDVCLNPPEVFDGTIAAQKALSAILR
TGQRFGAGHLVDLLRGRSTDKIRQFGHETLPTFGVGGELDDQGWRAVFRQLIAHGIIEPD
SSQYGALTLNAAARPVLKGETTLSLRRQRPTAGKKSRFAGYASSPAIELDAADQQLFDKL
RAWRQDIAKTQQVPAYVILHDRTLRELAQRRPRHRDGLVDITGLGEAKIERYGEALVELL
NA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgcactcgaagtcctccgtaccgtattcggctataacgcattccgcggcgat
caagccgccatcgtcgaccatgtggccgatgggggcgatgcgctcgtactgatgccgacc
ggcggtggcaaatccctttgttaccagattcccgcgctgctgcgcccaggcatcggcatt
gtcgtgtcgccgctcatcgcgctcatgcaggatcaggtcgacgccttgctgcaagcgggt
gtgcgcgctgcctatctgaattccagcctcagcttcgacgaagcgctcgataccgagcgc
cgcgctgcccgtggcgaactcgatctgctctatgtcgcgcccgagcgcctgctcacggag
cggtttctcgatctgctcgaccggctcgacgagcggggtcaactggcgctgttcgccatt
gacgaggcgcattgcgtttcccagtggggccatgacttccgtcccgagtacattcagctc
tcagcactgcacgaacgctacccgcgcgtgccgcgcattgcgctgaccgccaccgcggac
aacgcgacacgcgacgaaatccagacacgcctcggcctgaccgaagcgcgcctgttcgtc
tcgagcttcgaccggccgaatattcgttacgagatcgtcgatcgcgacaatccgcgcaag
cagttgcttgcctttcttgccaggcatcgcggcgaggcgggcatcgtctactgcctgtcg
cgcaaaaaggtggaggaaaccgccgcgtggctcgaaacgcagggcattccggccctgcct
tatcacgccggactcgatgcggaggttcgacgcacgcaccagcagcggttcctgcgagag
gaaggtctggtcatgtcggcgaccgtggccttcggcatggggatcgacaagcccgacgtg
cgcttcgttgctcacctggatttgcccaagagcctcgaagcctattatcaggaaacaggc
cgcgccggtcgcgacggcgaacccgcggaagcctggatggcctacgggctaaacgacgtc
gtggtgcatcgcagccgcatcgacgagtcgaacgccccggacctgcaaaagcgtatcgag
cgccaaaagctcgacgccctgctcggctattgcgaagcgccgcgttgccgccgcaccgtg
ctgctggcgtatttcggcgaggccagcgagccttgcggcaattgcgacgtctgcctgaac
ccgccagaagttttcgacggcacgattgcggcacagaaggcactttcggccattctgcgc
acgggccagcgcttcggcgccgggcatctggtggacctgttacgcgggcgcagcaccgac
aagattcgtcagttcgggcacgaaaccctgccgacattcggcgtcggcggcgaactcgac
gatcaaggctggcgcgcagtgtttcgtcagttgatcgcccacggcattattgaacccgac
agcagccagtacggcgcattgacgctgaacgcagcggcgcgccccgtgctcaagggggaa
accacgctatcgttgcggcgccagcgaccaacggctggcaagaagagccgctttgccggc
tacgcatcgtcgcccgctatcgaacttgacgccgccgatcagcaactgttcgataaattg
cgcgcctggcggcaggacatcgccaagacgcagcaggtgcctgcatacgttatcctgcac
gaccggacgctgcgtgagcttgcacaacgccgcccgcgccatcgcgacggtctcgtcgac
atcaccggactcggtgaggccaagatcgaacgctacggcgaagcgctcgtcgagctgctc
aacgcctga
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