Pandoraea apista: SG18_02955
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Entry
SG18_02955 CDS
T03588
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_02955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_02955
Enzymes [BR:
papi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG18_02955
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG18_02955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Utp25_C
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AJE97388
LinkDB
All DBs
Position
complement(2621918..2623408)
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AA seq
496 aa
AA seq
DB search
MADVNAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRAYATHTPLRNTVV
FGGVDMNPQKDALRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNDIKKLASSYLSNPVTIEVARRNATADNVEQVVYEVDE
DDKRAAVVQILNERDLKQVIVFVNSKVGASRLARQLEREGIVTAAIHGDKSQNERMQALE
AFKQGGIRALVATDVAARGLDISDLPGVINYDLPYNPEDYVHRIGRTGRAGASGEAISLC
APDERKQLVEIEKLIKRELKRGELVMERRSRSRDDRNGERYDRGERTDRSERSERHSRHD
GLRASRTGSSAPRRVRPEDEFFYKPYEPSPSADDMQRETRSSQESAAPTAFGALPDKAPK
RQVAALLAGFPRKASN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaaatgctgttccgacccccggcttcgatagctttgggctacatgcggac
atcttgcgggccatcgccgagcagggctacacccagccgacaccgatccaggcgcaagcc
attccggtcgtgctgtccggtcgcgatgtcatgggtgccgcgcaaacgggaacgggcaaa
accgccagcttctcgctgccgatcattcagcgtttgctccccgatgccaacacgagtgct
tcacccgcccgtcacccggtgcgtgcgctgattctcacgccgacgcgtgagcttgccgat
caggtcgccgacaacgtacgtgcctacgcaactcacacaccgctgcggaatacggtggtg
ttcggtggcgtcgacatgaacccgcagaaggacgcattgcgacgcggcgtcgagattctg
attgccacgccagggcgtctgcttgatcacgtcgagcagaagacggtgaatctgagtcag
gtgaagatgcttgtgctcgacgaagccgaccgcatgctcgacatgggtttcctgccggat
ttgcagcgcattctgaatttgctgccgaagcagcgtcagacgctgttgttctcggcaacg
ttctcgaacgacatcaagaagctcgcttcgagctatctctcgaatccggtcacgatcgag
gtggcccgtcgcaatgcgacggccgataacgtcgagcaagtcgtctatgaagttgacgaa
gacgacaagcgcgccgccgtggtgcagattctgaatgagcgcgacctcaagcaggtcatc
gtgttcgtgaacagcaaggtcggtgcgagccgtctcgcacgtcaattggagcgtgagggc
attgtcaccgctgcgattcacggcgacaaatcgcagaacgagcgtatgcaagcgctcgaa
gcgttcaagcaaggtggcattcgtgcactggtggcgaccgatgttgccgcgcgcgggctg
gacatctcggatctgccgggcgtgatcaactacgacctgccgtacaacccggaagactat
gtgcaccgtatcggtcgcacgggccgtgcgggcgcgtcgggcgaggcgatctcgctgtgt
gcaccggatgagcgcaagcaactcgtggaaatcgagaagctgatcaagcgcgaactcaag
cgtggagagctggtaatggagcgtcgcagccgttcgcgcgatgaccgtaacggcgaacgc
tacgatcgcggtgagcgtacggatcgatcggagcgcagcgagcgtcatagccgccacgat
ggcctgcgcgccagccgtaccggcagttccgcaccccgtcgcgttcgtccggaagacgaa
tttttctacaagccctacgagccgtcgccgtcggcggacgacatgcaacgtgaaacgcgc
tcgtcgcaagaatccgctgcgccgaccgcgttcggtgcgctacctgacaaggcgccgaag
cgtcaggtggcagcgctgctcgcgggcttcccccgcaaggcgagcaactaa
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