Pandoraea apista: SG18_04270
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Entry
SG18_04270 CDS
T03588
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_04270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_04270
03009 Ribosome biogenesis [BR:
papi03009
]
SG18_04270
Enzymes [BR:
papi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SG18_04270
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SG18_04270
Ribosome biogenesis [BR:
papi03009
]
Prokaryotic type
rRNA processing factors
SG18_04270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJE97576
LinkDB
All DBs
Position
2908069..2911362
Genome browser
AA seq
1097 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAVESAAANIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEIAE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
SLQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARALEDDPAGYSKKKEDVRPRQEAAVKGITP
EQPAPAAQPRPEPVAAVAPAAAAPARSGGFIGFVKRLLGLEPAAPAPVKVEEPAKPTARP
PRERHDRPHQQNRNRRGNARDDNKSGKDTAGQPAREGREGREGRGARPERAERAERAERG
ERNERQEGRDKRERDDTQRQPAQDVRAEEGREPREGRERGNRRDRNERRERRQPEGVDGQ
QAAPQRVAQAAAPLAAEHEELEQDRLTAQVEDGATVSASEEGEQGGEERRRSRRRGRRGG
RREREANEQQQHADGEHAESAASDDIGGVRAPVANDASAASDTAVIEAPVRTAAPAIPAS
VPLTPAPAPAVQAEPAPAPAQIHAVQTEAPVAAAPAVTVSEAAPAATPEVPAHVIAEPIA
PVNVTPLPTAEVATAPVVPPVSAPLPVATPSPAQPSVPADALTEIAATAATASAPADIRP
APTAPAQAAAPVAPVQMIETVKPAQAPAPASAAPSAAPVQAMPVAPEAAAAATEVVTQTP
APVAVAPTLERSALESTLASVGLVWVHTDADKHRAAKEAAAQAAPAPQVRRERRPATPIN
SGPMEQVETRTSSDHVA
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaattgtcgat
gggcagaaactcatcgatatcgatatcgaaacggccggccgcgaacagcgtaaaggcaat
atctacaagggtgtcatcacccgtatcgaaccctccctcgaagcttgcttcgtcaactac
ggtgaaggtcgccacggcttcctgccgttcaaggaagtcgcgcgggcgtacttccgcgaa
ggggcggatgtgcgcaatgcgcgcattcaggacgccctctccgaaggtcaggaactcatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacctcgtgctgatgccgaacaacccgcgtggcggtggcgtatcgcgc
cgcatcgagggtgaagaccgtcaggaactgcgcgaaacgatggcgcagctcgaactgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggtcgctcggccgaagaactgcag
tgggacttgaactatctgctgcaactctggcacgccgtcgaaagcgccgctgccaacatc
gaactgccgcgcgactcggcgctgatctacctcgagtcgagcctcgtgattcgcgccatc
cgcgattacttccagccggacatcggtgaaatcctcatcgatacggaagaaatcgccgaa
caggcgcgcaacttcatgcaagtggtcatgcccgaccacctgaaccgcgtgaagcagtat
cgcgacgacgtgccgctgttctcgcgtttccagatcgaacaccagatcgaaacggcgtat
tcgcgtcaggtgccgctgccctcgggtggcgcgatcgtgatcgatcacaccgaggcactg
gtctcgatcgacgtcaactcggcgcgcgccaccaagggtgccgacatcgaggaaacggcc
cttcgcaccaatctggaagctgccgacgaagtggcccgccagttgcgcctgcgcgatctg
ggcggtctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtc
gaacaacgggtcaaggacgcgctcaagcacgaccgtgcccgcgtccagatgggcaagatt
tcgcgtttcggcctgatggaactgtcgcgtcagcgtctgcgcccgtcgctgtcggaaggc
acgcacgtgacctgcccgcgttgcaacggcaccggccacatccgtgacgccgagtcgtcg
tcgctgcaagtcctgcgcatcattcaggaagaagccatgaaggagcacacggcagcgatc
cactgccaggtgccggtcgaggtttctgcgttcctgctcaacgaaaagcgtcaggaaatc
aacaagatcgaagcgcgcttcaaggttggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcactacaagctcgaacgcctgcgcttcgacgatccgcgtctcgatgccccgaag
gccagctatgcgctcgccgaggaagccgctcgcgcgctggaagacgatccggcgggttac
agcaagaagaaagaagacgtgcgtccgcgtcaggaagccgccgtcaagggcatcacgccc
gagcaaccggctccggctgcgcaaccgcgtccggaacctgtcgctgccgtggcaccggcc
gccgcagcccccgcacgcagcggcggcttcatcggtttcgtgaagcgcttgctgggtctc
gagccggccgcaccggcaccggtcaaggtcgaagagcctgcgaagccgaccgctcgcccg
ccgcgtgagcgtcatgaccgtccgcatcagcaaaaccgcaatcgccgtggcaacgcccgc
gacgacaacaagtcgggcaaggacaccgccggccaaccggcgcgtgaagggcgcgagggt
cgcgaaggtcgtggtgcgcgcccggaacgtgcagagcgcgccgagcgtgctgagcgcggc
gaacgcaatgagcgtcaggaaggccgcgacaagcgtgagcgcgacgacacccagcgtcag
cccgcacaggacgtacgtgccgaagagggccgcgagccgcgcgaaggccgcgaacgcggt
aaccgtcgcgaccgcaacgagcgccgcgaacgtcgccagccggaaggcgtcgacggccag
caagccgcaccgcaacgcgtggcacaagctgccgcaccgctcgccgccgagcatgaagaa
cttgagcaggatcgtctgacggcgcaagtcgaagacggcgcaacggtctccgcaagcgaa
gaaggcgagcaaggtggtgaagagcgccgtcgcagccgtcgtcgcggtcgtcgtggcggc
cgtcgtgagcgcgaagcgaatgagcagcaacagcatgccgatggcgaacacgcggaaagc
gctgcgtcggatgacatcggaggcgtgcgcgccccggtggcgaacgacgccagtgccgcc
agcgacaccgcagtgatcgaagctccggtccgcacggcagcgccggcgattccggcgagc
gtcccgctcactccggcgccggcacctgccgtgcaagccgagccggcgcctgcgcctgct
cagattcacgccgtgcaaacggaagctccggttgccgcagcaccggccgttaccgtaagc
gaagccgcaccggccgcaacgccggaagtcccggcccacgtgatcgccgaaccgatcgct
ccggtcaacgtgacgccgctgcccacggctgaagtggccacggcaccggtagttcccccg
gtcagcgcaccgctgccggtggcaacgccgagcccggctcagccctcggtgcctgccgac
gcgttgaccgagatcgctgcgaccgctgccaccgccagtgctccggcagacatccgccct
gcgccgacggcacctgcgcaagccgcagcgcccgtcgcgccggttcagatgatcgagacg
gtgaagccggcacaggctccggctccggcttcggccgccccgtccgccgcaccggtgcaa
gccatgccggtcgcaccggaagccgcagccgcggccacggaagtcgtgacgcagacaccg
gccccggtggccgtcgcaccgacgctggagcgcagtgcactggaatcgacgctggcaagc
gttggtctggtctgggtccacacggacgccgacaagcatcgcgccgccaaggaagccgcc
gcacaagccgcaccggcaccgcaagtgcgacgcgagcgccgtcctgccacgccgatcaac
agcggtccgatggagcaagtggaaacgcgcacctcgtcggatcacgttgcataa
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