Pandoraea apista: SG18_05825
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Entry
SG18_05825 CDS
T03588
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
papi
Pandoraea apista
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
papi03016
]
SG18_05825
Enzymes [BR:
papi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SG18_05825
Transfer RNA biogenesis [BR:
papi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SG18_05825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AJE97810
LinkDB
All DBs
Position
complement(3243735..3245990)
Genome browser
AA seq
751 aa
AA seq
DB search
MNIFFEESGGFKAGTVLSQQGESYQVELPGGRRSKIKGRDVLLRFESPSPSELIAQAQAA
AQDIDMSFLWECAPAEEFPFPTLAAEYFGETASAAQQAGLALALQASPIYFRRKGRGQYQ
RAPQEQIQAALAGLARKQQQAELQASYAEQMIAGTLPDAIKGKELLLLFRPDKNAIEWKA
LDAAASALGKTHAEVMLACGGIASPRAYHEAAFLYEYFPRGTGFPDVGPVPMPGDDLPLA
DVQAFSIDDSTTTEIDDALSVQLLPDGLLRVGIHIAAPALGITRGDAIDEIARVRLSTVY
APGEKITMLPDAVVEAYTLAEGGARPALSLYVVAKADTYEIVATETRAELVPISANLRHN
ELDSIITAETLADGSGDYPHKEELRLLWPFAQSLYDKRQAARVGYGLRPEVQNKTDFSFY
VDGEHVTIKQRLRGAPLDLIVAEMAILANSRWGRLLAECGVPGIYRAQRAYGVNRTRMQT
SPAPHEGLGVEQYAWSTSPLRRYVDLVNQWQLIACVRHGVTAKLAAPFKPKDADLYVTVS
SFEAAYAAYGEHQSRMERYWCLRWLLQENKTQVQASVLKGDTVRLNDIPLTLIVPGLGLH
ARGTQIMLDVLSLDVVTLGISVRLSQVLDASQSVLGDDDDEGEGGAGEGGDGGDGADGAD
GAEGAEGAEGANDADGSTDRATDDSSDGADSGDGRDDNDRAESRGHDDAAPASRETNARV
AQPADAVSETSPLAAALMAAGARDATASPAC
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcttttttgaggaatccggcggcttcaaggctggcacggtgttgtcgcagcag
ggtgagtcgtatcaggtggaactgcctggcggacgccgtagcaagatcaagggacgcgac
gtcctgttgcgttttgaatcgccctccccctccgagttgatcgcgcaggctcaggctgcc
gcacaggacatcgacatgagtttcctgtgggaatgcgcgcccgccgaggagtttccgttc
ccgacgcttgccgccgagtacttcggcgaaaccgcgagcgccgcgcaacaggccgggctg
gcactggccctgcaagcctcgccgatctacttccgccgcaaaggccgcggccagtatcaa
cgcgcgccgcaggaacagattcaggccgcgctcgctggcctcgcccgcaagcagcagcag
gcggagttgcaggccagctacgccgaacagatgattgcgggcacgctgcccgacgcgatc
aagggcaaggaactgctgttgctgttccgcccggacaaaaacgctatcgagtggaaggcg
ctcgacgccgcagccagtgcactgggcaagacgcacgccgaagtgatgctcgcctgtggc
ggcattgcgtcgccgcgtgcttatcacgaggccgccttcctctatgaatatttcccgcgc
ggtaccggcttccctgacgtggggccggtcccgatgccgggcgacgatctgccgctggcc
gacgtgcaggcgttttccatcgacgactcgacgacgacggaaatcgacgacgccctgtcg
gtgcaactgctgcccgacggcctgctgcgtgtgggtatccacattgcggcgccggcgctc
ggtatcacgcgtggcgacgctatcgacgagatcgcccgcgtgcgtctgtcgacggtctat
gcgccgggcgagaagatcacgatgttgcccgacgccgtggtcgaggcgtacaccctcgcc
gagggcggtgcgcgtccggcgttgtcgctgtacgtggtggccaaggctgacacgtacgaa
atcgtggccaccgaaacgcgtgccgagcttgtgccgatttccgcgaatctgcgtcacaac
gaactcgactcgatcattaccgccgaaacactggccgacggcagcggcgattacccgcac
aaggaagaactgcgtttgctgtggccgttcgcgcagtcgctctacgataagcgtcaggcc
gcgcgcgtgggttacggcctgcgtccggaagtgcagaacaagaccgacttcagtttctat
gtcgacggcgagcacgtcacgatcaagcaacgcctgcgcggcgctccgctggatctgatc
gtcgccgagatggcgattctggcgaacagccgttggggacgcttgctggccgaatgtggc
gtgcccggcatctaccgtgcgcagcgtgcctacggtgtgaaccgtacgcgcatgcagacc
tcgccggcgccgcatgaaggtcttggcgtcgagcagtacgcgtggagcacatcgccgctg
cgtcgctacgtcgacctcgtgaaccagtggcagttgatcgcctgtgtgcgtcacggcgtg
acggccaagctggcggcgcctttcaaaccgaaggatgccgatctgtacgtcactgtctcg
agcttcgaggccgcctatgccgcctacggcgagcatcagagccggatggagcgctactgg
tgcctgcgctggctgcttcaggagaacaagacgcaggtgcaggcgagtgtgctcaagggc
gacacggtgcgcctgaacgacattccgctgacgttgatcgtgccgggccttggcctgcat
gcgcgcggcacgcaaatcatgctcgatgtgctgtcgctcgacgtggtcacgctaggtatc
tcggtgcgtctctcgcaggtgctcgatgccagccagtcggtgcttggcgacgacgatgac
gaaggagaaggcggcgcaggcgaggggggcgacggcggtgacggggctgacggcgcagac
ggtgcggagggcgcggagggcgcggagggcgcgaatgatgccgacggttctaccgaccgc
gctaccgacgacagtagtgacggcgcagacagtggcgatggccgtgacgataacgatcgt
gccgaaagccgcggtcacgacgatgctgcgccggcttcgcgcgagacgaatgctcgcgtc
gcacaaccggcagatgccgtttccgagacctcgccgcttgctgctgcgctgatggctgcg
ggcgctcgcgacgcaactgccagcccggcgtgctga
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