Pandoraea apista: SG18_07665
Help
Entry
SG18_07665 CDS
T03588
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_07665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_07665
Enzymes [BR:
papi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG18_07665
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG18_07665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
CARD_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
AJE98094
UniProt:
A0A5E5NY86
LinkDB
All DBs
Position
complement(3642342..3643958)
Genome browser
AA seq
538 aa
AA seq
DB search
MSFETLGLSADILRAVADLGYTHPTPIQLQAIPAVLQGGDLLAGAQTGTGKTAGFTLPIL
QMLASRARPAAANGKRPVRALVLTPTRELAAQVEESVTQYGKYLRLTSMTVFGGVSMVPQ
VKQLARGVDILVATPGRLLDHMQQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLP
AKRQNLLFSATFSDEIKQLADGLLKSPALIEVARRNTTAETIAQKIHPVDRDRKRELLEH
LVREHNWFQVLVFTRTKHGANRLAEQLTKGGIPALAIHGNKSQGARTRALAEFKSGTLQV
LVATDIAARGIDIDQLPHVVNFDLPEVAEDYVHRIGRTGRAGANGEAVSLVCVDEHQLLT
QIERLIKRTIDREVIPGFEPDPHAVAQPIRKAQQGRGAGGGRGGRSGGDDARQPARAPRE
AREPKPRREGERGGRQGGNGGKAGTGVNAGNAGNAGHGGQQRQQAPKRQADAQRAPARAA
QPSGAPRQGQGQDGRSSQSAPRGQGGGGERGDFAQRGPRPARRDGAGGALLMGKPKRD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaacgctcggcctgtcggccgacatcctgcgtgcggttgccgacctcggc
tatacccacccgactccgattcaactgcaagccatcccggcagttctgcaaggcggcgat
cttctcgccggcgcccagaccgggactggcaagacggcgggctttacgctgccgatcctg
caaatgctcgcttcgcgcgcacgcccggcggcagcgaacggcaagcgcccggtgcgcgcc
ctcgtcctgacccccacgcgcgagctggcggcacaggtcgaggaaagtgtcacgcaatac
ggcaagtacctgcgccttacgtccatgaccgtgttcggtggtgtgtcgatggtgccgcag
gtcaaacaactggcgcgcggcgtggatattctcgtcgctacgccgggtcgtctgctcgat
cacatgcagcagaagacggtcgatctgtccggtgtcgagattctcgtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccgcgatattcgccgtgtgctggcggtgctgcct
gcgaagcgtcagaacctgctgttctcggccacgttctccgacgagatcaagcaactggcc
gatggcctgctcaagtcgccggcgctcatcgaggtcgcacgtcgcaacacgacggccgag
accatcgcgcagaagattcatccggtcgatcgcgaccgcaagcgcgaactgctcgaacac
ctcgtgcgtgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcg
aatcgtctggccgaacaattgacgaagggcggcattcccgcgctcgcgattcacggcaac
aagagtcagggggcgcgcacccgtgcgcttgccgaattcaagagcggcacgctgcaagtg
ctggtcgcgaccgacatcgccgcgcgcggtatcgatatcgaccagctaccccatgtggtc
aatttcgatctgccggaagtggcggaggattacgtgcaccgtatcggccgcacgggtcgc
gcaggcgcgaacggcgaagccgtgtcgctcgtgtgtgtggacgaacatcaactgctcacg
cagatcgagcgtctcatcaagcgcaccatcgaccgcgaagtgatcccggggttcgagccg
gatccgcatgcggtcgcgcaaccgattcgcaaagcccagcagggccgaggcgcgggtggc
ggacgcggtggacgcagcgggggcgacgatgcacgccaacccgcacgcgcgccgcgcgaa
gcccgtgagccgaagccgcgtcgcgagggcgagcgcggtggccgtcagggtgggaatggt
ggcaaggcgggtaccggcgtgaatgctgggaatgccggaaatgccggccacggcgggcag
cagcgccaacaggcgcccaagcgtcaggcagacgcccaacgcgcccccgcgcgtgcagca
cagccatctggtgccccgcgccaaggccaggggcaggatggccgtagctcgcagagcgca
ccgcgcggtcagggcggtggtggcgagcgtggcgacttcgcacagcgcggtccgcgtccg
gctcgccgcgacggggccggtggcgcgttgttgatgggcaagcccaagcgcgactaa
DBGET
integrated database retrieval system
