KEGG   Pandoraea apista: SG18_09360
Entry
SG18_09360        CDS       T03588                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
papi  Pandoraea apista
Pathway
papi02020  Two-component system
Brite
KEGG Orthology (KO) [BR:papi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    SG18_09360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:papi03021]
    SG18_09360
Transcription machinery [BR:papi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SG18_09360
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_24 Sigma70_ECF HTH_40 HTH_23 HTH_AsnC-type HTH_IclR HTH_Crp_2 HTH_28 Crp LacI GerE
Other DBs
NCBI-ProteinID: AJF00880
LinkDB
Position
complement(4077274..4077807)
AA seq 177 aa
MRDDTGGRKNDARADASGVATLYHDHHGWLRNWLQRKLGNHGDAADLAHDTFVRLLSKDT
LVCPREPRAFLTVVAQGLVANLHRRRKIEAAYLDALAAQPEAVAPDPETRAILLQTLIDI
DRRLDGLPPVVRRVFLMSQLDGLAQRDIAEAVGLSIATVQRHIVKALHACCFGNPAA
NT seq 534 nt   +upstreamnt  +downstreamnt
atgcgtgacgacaccgggggacgcaaaaacgacgcacgcgccgacgcgtccggcgtggct
acgctctatcacgatcaccacggctggctgcgcaactggttacaacggaagctcggcaat
cacggcgacgctgccgatctcgcgcacgacaccttcgtgcgactgctcagcaaggacacc
ctcgtctgtccgcgcgagccccgggcgtttctcaccgtcgtggcgcaaggattggtcgcc
aatctgcatcgccgtcgcaagatcgaagcggcgtatctcgatgccctcgcggcacaaccc
gaggccgtcgcgcccgatccggaaacgcgcgcaatcctgctccagacactcatcgacatc
gaccggcgcctcgacggcttgccgcccgttgtccggcgcgtcttcctgatgtcgcaactc
gacggccttgcgcagcgcgatatcgccgaggccgtcggcctttccatcgccaccgtgcag
cgtcacatcgtcaaggcgctgcacgcctgttgtttcgggaatcccgccgcatga

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