Pandoraea apista: SG18_17210
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Entry
SG18_17210 CDS
T03588
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_17210 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
papi03021
]
SG18_17210 (rho)
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_17210 (rho)
Transcription machinery [BR:
papi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SG18_17210 (rho)
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SG18_17210 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AJE99504
UniProt:
A0A0B5F5I8
LinkDB
All DBs
Position
complement(452058..453320)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSELLEMANGLEIENANRLRKQELMFAILKKRAKTGETIYGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
DHPPEASKHKIMFENLTPLHPNKPLLLERDIRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIATNHPEAKLFVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHV
QVAEMVIEKAKRLIEMKQDVIILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKLIYDMDEAEAMEFLLGKIKQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaagtcccagcacgtctccgaactgcttgaaatggcgaatggc
ctcgagatcgagaacgccaaccgccttcgcaagcaggagctgatgttcgccattctgaag
aagcgcgctaagaccggcgaaacgatctatggcgacggtacgctcgaggtgctgccggat
ggcttcggtttcctgcgctcgcccgagacgtcgtatctggccagcacggacgatatctat
atcagcccgtcgcagatccgtcgtttcaacctgcataccggagatacgatcgaaggggaa
gtgcgcacaccgaaggacggcgagcgttatttcgcgctcgtgaaggtcgacaaggtcaac
gaccacccgcccgaggcctcgaaacataagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgctgctcgagcgcgacattcgaggtgaagagaacgtgacgggccgc
atcatcgacatgattgccccgatcggcaagggtcagcgcggtctgctcgtggcctcgccg
aagtcgggcaagaccgtgatgctgcaacacatcgctcacgccattgccaccaaccatccg
gaagccaagcttttcgtgctgctcatcgacgagcgcccggaagaagtgaccgaaatgcag
cgttcggtgaagggcgaagtgatcgcttcaacgttcgacgaaccggctacgcgtcacgtc
caggttgccgaaatggtgatcgagaaggccaagcgcctgatcgaaatgaagcaggacgtg
atcattctgctcgactcgattacgcgtctggctcgcgcctacaacaccgtgattccggca
tcgggcaaagtgctcaccggcggtgtcgacgccaatgcattgcaacgcccgaagcgcttc
ttcggcgcggcgcgtaacgtcgaggaaggcggctcgctcaccatcatcgccacggcgctg
atcgagactggcagccgcatggacgacgtgatctatgaagaattcaagggcacgggcaac
atggaagtgcaccttgagcgccgccttgcggaaaagcgcgtctacccgtcgatcaacctg
aacaagtcgggcacgcgtcgcgaagaactgctcatcaagccggaaatcctccagaagatc
tgggtgctgcgcaagctcatctacgacatggatgaggctgaagccatggaatttctgctt
ggcaagatcaagcagacgaagaacaacgcagagttcttcgacctgatgcgccgcggcggc
tga
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