Pandoraea apista: SG18_19765
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Entry
SG18_19765 CDS
T03588
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_19765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_19765
Enzymes [BR:
papi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG18_19765
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG18_19765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJE99877
UniProt:
A0A5E5PBP3
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All DBs
Position
1004590..1006035
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AA seq
481 aa
AA seq
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MSFASLGLIEPLLRNLQELNYKTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPVVSSNRARVLVLVPTRELAEQVLQSFIEYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQIQTLVLDEADRMLDLGFARELNAVFAALPAKR
QTLLFSATFSDDIRTMAASILRQPVDISVSQPNATASKVKQWVVPVDKKNKPDLFMHLVA
QNRWEHALVFVKTRNGVDYLAAILDEAGYAVDTIHGDKPQPARLRALERFKTGEVSMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKGVQAAPGAVPVPAKKPRSQ
NGDNKRKPVTRGATGAGKGASVSGGNPFGAQKPRSKSAGKPATGSRKPAGKSTGGRSKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgagccgttgctgcgcaacttgcaggaactcaat
tacaagacacctacgccggtgcaggccaaggcgatcccggctgttcttggtggcaaggac
gtcatggctgcggcacagaccggcacgggcaaaacggcgggattcgcactgccgctgttg
cagcggctggtgcagcacggaccggttgtgtccagcaaccgtgcgcgggttctggtgctg
gtgccgacgcgagaactcgccgaacaagtgctgcaaagcttcatcgagtacggcaaaggc
ctcgacttgcgatttctggccgcctacggcggtgtgagcatcaatccccagatgatgaag
ttgcgcaaaggcgtggatgtgctcgttgccacgccgggccgtttgctcgacctcaatcgc
cagaacgccgtacagttcgatcagattcagacgctggtactcgacgaggccgaccgcatg
ctggatctggggtttgcgcgcgaactcaatgcggtcttcgctgcgctgcctgcaaagcgt
cagaccctgctgttctctgccacgttttccgacgatatccgcaccatggccgcgagcatt
ctgcgccagccggtcgatatcagcgtgagccagcctaacgccacggccagcaaggtcaag
cagtgggtggtgccggtggacaagaagaacaagcccgatctcttcatgcatctggtggcg
caaaaccgctgggagcatgccctggtgttcgtcaagacacgcaatggcgtggattacctg
gcggccatactggatgaagcgggctatgcggtcgacaccattcacggggacaaaccgcaa
cccgcacgcttgcgcgcgctggagcgcttcaaaacgggcgaagtctccatgctggtcgcc
acggatgtggcggcgcgagggctggatatcgacgacctgccgctagtgatcaacgttgat
ctgccgatcgtggcgcaagactacgtgcatcgtatcgggcgcacaggccgcgcgggcgcc
agcggggtggcggtgtcgctcgtgtgtgccgatgaggcgccgcaattggccgcgatcgaa
gcgctgatccggcaaacgttgccacgagaagaggagccgggttttgaagccgaacaccgc
gtgccgcaaaccagcgcgaccggccaaatcatcaagaagcccaaaaaaccgaagaaaccc
aaaggggtgcaagcggcaccgggcgccgtgccggtgcccgccaagaagccgcgttcgcaa
aacggcgacaacaaacgaaagcctgtaacgcggggcgccacgggggcggggaaaggcgcg
agtgtgtctggtggtaacccgtttggcgcgcaaaagccacgcagcaaatccgccggcaag
cccgcaacgggttcacgtaagcctgcgggaaagtctactggcgggcgtagcaaacgccag
ccctga
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