Pandoraea apista: SG18_22225
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Entry
SG18_22225 CDS
T03588
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
papi
Pandoraea apista
Pathway
papi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SG18_22225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
papi03400
]
SG18_22225
Enzymes [BR:
papi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SG18_22225
DNA repair and recombination proteins [BR:
papi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SG18_22225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
AAA_30
SNF2-rel_dom
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJF00212
UniProt:
A0A0B5FHK7
LinkDB
All DBs
Position
1578119..1581583
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSANAISRSTVPVPLVKAGQRYAFAGSHASSDALLIARYFEENRERLPLLAVVCAQATD
ALRLQQELKWCAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEKRCDIVLVPA
TTALYRMAPANFMAAYTFFFTQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLID
LYPMGSALPYRLDLFDDTVDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDEPARTAFRGR
WREVFEGDPSRSPVYKDIGSGVPSAGIEYYLPLFFEETATLFHYLPADAQLVFVGDLDAA
IHRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFTLAKPFARLTLPTPGDGSWAVPL
PSLAVNRRADDPLAALRAYLTRTPARVLLCADSAGRRETLLQLLHDNDLRPSTVESLEDF
LTSDTRFAIGVAPLAAGFLLPTEDLAFVTENELYEGLARRAGKRRQEQATSVDSMVRDLA
ELKVGDPVVHSQHGIGRYQGLVSMDLGEGETEFLHLEYSGESKLYVPVSQLHLISRYSGA
DPDTAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGYAFELSPRDYEKFAD
SFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVALL
APTTLLAEQHAQTFSDRFADWPVRIAELSRFKTTKEVNASVKAINEGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEELVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKSLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVSALKAGREPDLTAPLAATTEINLHVPAILPSD
YCGDVQERLSLYKRLANGTSPDAIDTTQEELVDRFGKLPQQAQALIETHRLRLLAKPLGI
VKIDASEDAIALQFEPTPAVDPMRIIELVQKHRHIKLAGQDKLRIEVKHAELTDRVRAIK
ETLRALGSPGAKAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgccaacgctatatcccgtagtaccgtgcctgtgccgctcgtgaaagcggga
cagcgttacgcattcgccggttcgcacgcgtccagcgacgccttgctcattgcccgctat
ttcgaagaaaaccgcgagcgcctgccgctgctcgccgttgtgtgcgcgcaggccaccgat
gccctgcgccttcaacaggagctgaagtggtgcgcccccgaggcgcgcgtgcggctgctg
cccgactgggagacgctgccctacgacacgttctcgccacaccaggatctcgtctccgaa
cgactcgccaccctgcacgacctcggcgagaagcgctgcgacattgtgctggtgcccgcg
accacggcgctctaccgcatggcgccggccaacttcatggcggcctatacgttcttcttc
actcagggggagcgcctggacgaagcccggctgaagtcgcagctcacgctggcgggctac
gagcatgtgagtcaggtcatgcgacccggcgagtactgcgtgcgcggcggattgatcgat
ctctacccgatgggctcggcactgccctatcgactcgatctgttcgacgacaccgtcgac
agtattcgtgcgttcgatcccgatacgcagcgcagtctgtacccggtcaaggaagtccgc
ctgctgccggggcgcgaattcccgttcgacgaacccgcgcgcacggcgtttcgcggccgc
tggcgtgaagttttcgagggcgacccgagccgcagcccggtctacaaggacattggcagc
ggtgtgccgtcggccggcatcgagtattacctgccgctgttcttcgaagaaacggccacc
ctgttccactatctgcccgccgacgcccaactggtgttcgtgggcgatctcgacgccgcg
attcaccgcttctggaacgacacgcgccagcgctacaacttcctgtcgcacgatcgcgag
cgtccggtgttgccgcccgagcagctgttcctgctcgatcaggacttcttcacgctcgcc
aagccgtttgcaaggctaacgctacccacaccgggtgacggcagttgggctgtcccgctc
ccctcgttggccgtcaaccgccgagccgacgacccgcttgccgcactgcgcgcgtacctg
acccgcacgccggcgcgtgtgctgttgtgcgccgattccgccggccgtcgcgaaacgctg
ctgcaactgctgcacgacaatgatctgcgcccgtccacggtcgagtcgctcgaagatttt
ctgacatccgatacgcgcttcgctatcggtgtcgccccgctggccgccgggttcctcttg
ccgacggaagacctcgcgttcgtcaccgaaaacgagctttacgaaggtctcgcacgacgc
gcaggcaagcgccgtcaggagcaggcaacgtccgtcgactcgatggtgcgcgaccttgcc
gaactcaaggtcggcgacccggtcgttcacagccagcatggcatcggccgctatcagggt
ctcgtcagcatggacctcggggaaggcgaaaccgagttcctgcatctcgaatactcgggc
gagagcaaactgtacgtgccggtctcgcagttgcacctgatctcgcgctacagcggcgcc
gaccccgacaccgcgccgctgcactcgctcggctcgggccaatgggaaaaggcgaaacgc
aaagcggcgcaacagattcgcgacactgcggccgaactgctcaacctctatgcccgtcgc
gccgcgcgctcgggctatgccttcgaactgtcgccgcgcgactacgagaagttcgccgac
agcttcggtttcgaagaaacgcccgatcaggcggccgccatcgctgcggtcatgagcgac
atgacgagcgggcgtccgatggatcgtctggtgtgcggcgacgttggcttcggcaagacc
gaagtggccttgcgtgccgcgttcatcgctgtgctcgacggcaagcaggtcgcgctgctc
gcgccgacaaccctgctcgccgaacagcatgcgcagaccttctccgatcgcttcgccgac
tggccggtgcgcattgccgaactgtcacgcttcaaaacaacgaaggaagtgaacgcgagc
gtcaaggcgatcaacgaagggcaggtcgacatcgtgatcggtacgcacaagctgctctcg
aacgatatccagttccaacgccttggcctggtcatcatcgacgaagaacaccgcttcggc
gtgcgtcagaaggaagccctcaaggccctgcgcgccgaggtggacgtgctcacgctgacc
gctaccccgattccgcgcacgctgggcatggccctcgaagggttgcgcgatttctcggtc
atcgcgaccgcaccgcaaaaacgtctggcgatcaagacgttcgtgcgccgcgaggaagac
ggcgtgattcgcgaagcgatgttgcgcgaactcaagcgcggcgggcaggtgtacttcctg
cataacgaagtcgagaccatcgaaaaccgtaaggcgcagttggaagaactcgtgcccgag
gcccgcatcgttgtcgcccacgggcaaatgcacgaacgcgatctcgagcgcgtgatgcgc
gacttcgtcacgcagcgtgccaacgtgctgctatgtacgaccatcatcgagaccggcatc
gacgtgccgaccgccaacactatcctgatgcatcgcgccgataagttcggtctcgcacag
ttgcaccagttgcgtggccgtgtgggccgctcacaccatcaggcatacgcttatctgctc
gtgcacgatccgaagtcgctcaccaagcaggcgcaacgccgtctcgaagcgattcagcag
atggaagaactcggcgccggcttctacctcgcgatgcacgatctcgagattcgcggcgcg
ggtgaagtgctgggcgacaagcaatcgggcgaaatccacgagatcggcttccagctttac
accgacatgctggccgacgccgtgagcgcgctgaaagccggtcgcgaaccagatctcacc
gctccgctcgcggcaaccaccgaaatcaatctgcacgttccggccattctgccgagcgat
tactgcggcgacgttcaggagcgcctgtcgctctacaagcggctcgccaacggcacgagc
cccgacgccatcgacacgacacaggaagagcttgtcgatcgcttcggcaaactgccgcaa
caggcgcaggcccttatcgagacacaccgtctgcgtctgttggccaagccgctgggcatt
gtgaagatcgacgcgagcgaggacgccatcgccctgcaattcgaaccgacgcccgccgtc
gacccgatgcgcatcatcgaactggtgcaaaagcatcgccacatcaagctcgcaggtcag
gacaagctgcgcatcgaagtcaaacacgcggagctgaccgaccgcgtgcgcgcgatcaag
gagacgttgcgtgccctcggctcaccgggcgcgaaggcggcctga
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