Pandoraea apista: SG18_22950
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Entry
SG18_22950 CDS
T03588
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
papi
Pandoraea apista
Pathway
papi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG18_22950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papi03019
]
SG18_22950
03016 Transfer RNA biogenesis [BR:
papi03016
]
SG18_22950
Enzymes [BR:
papi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SG18_22950
Messenger RNA biogenesis [BR:
papi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SG18_22950
Transfer RNA biogenesis [BR:
papi03016
]
Prokaryotic type
tRNA degradation factors
SG18_22950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AJF00317
LinkDB
All DBs
Position
complement(1742378..1744534)
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AA seq
718 aa
AA seq
DB search
MQMFNKVVKSFQWGQNTVRMETGEIARQASGAVLVDMDDTVVLATVVGAKKAKAGQDFFP
LTVDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFYNEVQVVVQVV
SLNPEVPADIPALIGASAALAISGLPFNGPVGAARVAYIDSQYVLNPSREQIAKSKLDLV
VAGTEQAVLMVESEAQELPEDVMLGAVVFGHEQMQTAINAIHDLVRDGGKAEWEWAPAAK
NEALIAQVTELAEGPLRAAYQTREKQARTQQLRAVSSDVIAKLAEAATAKGEAAPDEIEV
GNILFDLEARIVRSQILAGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVV
ATLGTKSDEQIIDALQGEYRDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALVA
CLPGADDFGYTVRVVSEITESNGSSSMASVCGGSLAMMDAGVPMTSPVAGIAMGLILDGN
KFAVLTDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI
LAKMTEAQSGVRTELSEFAPRMVTIKINPEKIRDVIGKGGSVIRALTEETGTSIDISDDG
VVTIASPSAEGIAEAKRRIELITVEVEVGQVYDGTVLKLLEFGAIVSVLPGKDGLLHISE
IANERIKDINEYLKEGQPVRVKVIQQDDKGRLRLSHKALTDEEKQGGPALVKREGEAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaatgttcaataaagtcgtgaagtctttccaatggggacaaaacacggttcgcatg
gagaccggtgagattgcccgtcaggcatccggtgctgtgctcgtcgacatggacgatacc
gtcgtgctcgccacggtcgtgggcgccaagaaggccaaggcaggtcaggatttcttcccg
ctgaccgtcgactatctggaaaagacttacgccgccggcaagatcccgggtggcttcttc
aagcgtgaaggccgtccgtcggaaaacgaaacgctgacgtcgcgcctgatcgatcgtccg
atccgcccgctgttcccggaaggcttctacaacgaagtccaggtcgtggtgcaggttgtc
tcgctgaatccggaagtgccggccgacattccggcgctgatcggcgcttcggccgcgctg
gccatctcgggcctgccgttcaacggcccggtcggcgccgcacgcgtggcttacatcgac
agccagtacgtgctcaacccgtcgcgcgaacagatcgccaagtcgaagctcgacctggtc
gtcgccggtacggaacaagccgtgctgatggtggaatcggaagcgcaggaactgccggaa
gacgtgatgctgggcgctgtggtgttcggtcacgagcaaatgcaaacggcgatcaacgct
attcacgacctcgtgcgtgatggcggcaaggccgagtgggagtgggcgccggctgccaag
aacgaagcgctgattgcacaagtgaccgagctggccgaaggcccgctgcgcgccgcttac
cagacgcgtgaaaagcaagcccgtacgcaacaactgcgcgctgtgagcagcgacgtgatc
gccaagctggccgaggccgcgaccgccaagggcgaagctgccccggacgagatcgaagtg
ggcaacatcctgttcgatctggaagccaggatcgtgcgtagccagattctggcgggcgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgtccgatctcgatccgcactggcgtt
ctgccgcgtgcccacggttcggcgctgttcacccgcggcgaaacacaggcgctcgtggtg
gccacgctgggcaccaagagcgatgagcagatcatcgacgcgctgcaaggcgagtaccgt
gatcgcttcatgctgcactacaacttcccgccgttctccacgggcgaaacggggcgcgtg
ggttcgcccaagcgtcgcgaaatcggtcacggccgtctggccaagcgcgctctcgtggcg
tgcctgccgggcgctgacgatttcggctacaccgtgcgtgtggtgtcggaaatcaccgag
tcgaacggttcgtcgtcgatggcatcggtgtgcggcggtagcctcgccatgatggacgcc
ggtgtgccgatgacctcgccggtcgccggtatcgcaatgggcctgatcctcgacggcaac
aaattcgccgtgctgaccgatattctcggcgacgaagatcacctgggcgacatggacttt
aaggtggccggcacgtcgaatggcgtgaccgcactccagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcactggcgcaagccaaggaaggccgtctgcatatt
ctcgccaagatgacggaagcccagtcgggcgtgcgtaccgagttgtcggaattcgcgccg
cgcatggtcaccatcaagatcaacccggaaaagatccgtgacgtgatcggcaagggtggc
tcggtgatccgcgcactgacggaagagaccggcacgagcatcgacatctcggacgacggc
gtggtgacgattgccagcccgagcgccgaaggcattgccgaagcgaagcgtcgcatcgag
ctgatcaccgtggaagtcgaagtcggtcaggtgtacgacggcaccgtgctgaagctcctc
gagttcggcgcgattgtgtcggtgctgccgggcaaggacggtttgctgcacatttccgaa
attgccaacgagcgtatcaaggacatcaacgagtacctgaaggaaggtcagccggtgcgc
gtgaaggtgatccagcaggacgacaagggccgtctgcgcctgtcgcacaaggcactcacc
gacgaagaaaagcagggtggcccggcgctggtcaagcgcgaaggcgaagcccagtaa
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