Pandoraea apista: SG18_23815
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Entry
SG18_23815 CDS
T03588
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
papi
Pandoraea apista
Pathway
papi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SG18_23815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
papi03021
]
SG18_23815
Transcription machinery [BR:
papi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SG18_23815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
SPO22
Motif
Other DBs
NCBI-ProteinID:
AJF00441
LinkDB
All DBs
Position
complement(1944702..1946798)
Genome browser
AA seq
698 aa
AA seq
DB search
MEVMPATVEPPVSKTRGKAAKTAASGAQNVAANTNDQPVNEDQTKVEKQKARDRRAKEKA
LLKDAFSSHQPGTAEELEERRGKLRTLIKLGKERGFLTFAEINDHLPDDVVEGDALEGVI
ATFNDMGVAVYEQAPDAETLLLNDNAPNAATDDEVEEQAEAALSTVDSEFGRTTDPVRMY
MREMGTVELLTREGEIEIAKRIEEGLKHMVQAISACPTTIAEILAMAEKVEREEMRIDEV
VDGLIDPNADAVAAAASEDEDFDADAEEEAAEEEEEADEEDDSSSGGGASAAQVEQLKRD
ALAKFAVIAEWFGKMRRAFEKEGYQSKPYVKAGEAIQMELMTIRFTARTVERLCDTLRSQ
VDEVRNIERAILNIVVDKCGMPRADFVQRFPGNETNVDWIYTVVADNKAYSSVVERNVPA
VRELQQKLIDLQARVVLPLAELKDVNRKMAEGERRARKAKREMTEANLRLVISIAKKYTN
RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM
IETINKMNRISRQILQETGVEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDD
SHLGDFIEDTGTVAPADAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEV
GKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggaagtcatgccggcaacagttgaaccacccgtctccaagacgcgtggcaaggccgcg
aagaccgccgcttcgggagcgcaaaacgtcgcagcgaatactaatgatcaacccgtgaac
gaagatcagaccaaagtggaaaagcagaaggcgcgtgatcgccgggcaaaagagaaagca
ctgctcaaggacgcattttcctcgcaccagcccggtacggccgaggaacttgaggaacgt
cgcggcaaactgaggacactgatcaagctgggcaaggaacgtggcttcctgacctttgca
gagatcaacgaccacctgcccgacgacgtggtggagggcgacgcgctggaaggcgtgatc
gcaacgtttaacgacatgggcgtggccgtctacgagcaggcgccggatgccgaaacgctg
ttgctcaatgacaatgcgccgaacgctgcaacggacgacgaagttgaggagcaagcggaa
gcggctctgtcgacggtcgattccgagttcggtcgcacgactgacccggtgcgtatgtat
atgcgcgaaatgggtacggtcgaactgctgacgcgcgaaggcgaaatcgagatcgccaag
cggatcgaggaaggcctgaagcacatggtgcaggccatttccgcatgcccgacgacgatt
gccgagatcctggccatggccgaaaaggtcgagcgcgaagaaatgcgcatcgacgaagtg
gtcgacggtctgatcgatccgaatgcggacgctgtggcggcggccgcctctgaagacgaa
gatttcgacgcggatgcggaggaagaagcggcagaagaggaagaagaagcggacgaggaa
gacgacagcagcagcggtggtggtgcttcggctgcgcaggtcgagcagctcaagcgcgat
gcgctcgccaagttcgccgtgattgccgagtggttcggcaagatgcgtcgtgcgttcgag
aaggaaggttatcagtcgaagccgtatgtgaaggctggcgaagccatccagatggagctg
atgacgattcgcttcacggcgcgtacggtcgagcgtctgtgcgacacgctgcgttcgcaa
gtggacgaagtgcgtaacatcgagcgtgcgattctgaacatcgtggtcgacaagtgcggc
atgccgcgcgcggatttcgtgcagcgtttcccgggcaacgaaaccaatgtcgattggatc
tacaccgttgtggccgacaacaaggcatatagctcggtggtggaacgtaacgtgccggcc
gtgcgggaacttcagcagaagctgatcgacctgcaggcacgcgtggtgctgccgcttgcg
gaactcaaagacgtcaatcgcaagatggcggaaggtgagcgtcgcgcgcgcaaggctaag
cgtgagatgaccgaagcgaacttgcgtctggtgatttcgatcgcgaagaagtacacgaac
cgcggcctgcagttcctggatctgattcaggaaggcaacattggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggttacaagttctcgacgtacgccacgtggtggattcgt
caggcgattacgcgttcgatcgctgaccaggcgcgtaccatccgtattccggtgcacatg
atcgaaacgatcaacaagatgaaccggatttcgcgtcagattctgcaggaaaccggtgtt
gagccggatccggcgacgctggccgagaagatggaaatgccggaggacaagatccgcaag
atcatgaagatcgcgaaggagccgatctccatggaaacgccgatcggtgacgacgacgat
tcgcacttgggtgatttcatcgaagatacgggcacggtagcacctgctgacgccgcattg
catggtagtatgcgcgacgtcgtgaaggacgtgcttgattcgctgacgccgcgcgaggcc
aaggtgctgcgcatgcgtttcggtatcgagatgagcacggaccatacgctcgaggaggtg
ggcaagcagtttgacgtgacgcgtgagcgtattcgtcagattgaagccaaggcgctgcgc
aagctgcgtcacccgagccgttccgacaagctcaagtcgttcctcgaaggcaattga
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