Proteus appendicitidis: QQS39_01450
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Entry
QQS39_01450 CDS
T09947
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
papp
Proteus appendicitidis
Pathway
papp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQS39_01450 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papp03019
]
QQS39_01450 (rnr)
03016 Transfer RNA biogenesis [BR:
papp03016
]
QQS39_01450 (rnr)
Enzymes [BR:
papp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QQS39_01450 (rnr)
Messenger RNA biogenesis [BR:
papp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQS39_01450 (rnr)
Transfer RNA biogenesis [BR:
papp03016
]
Prokaryotic type
tRNA degradation factors
QQS39_01450 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
WIV88705
UniProt:
A0ABY8Y8H5
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Position
283562..286054
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AA seq
830 aa
AA seq
DB search
MSKDPFQDREAEKYASPIASREYILEEMKKRTAPMSREDLAQALKISGEEDLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLWKGKVIGHRDGYGFLRAEGQKDDLYLSQDEMKKTMH
GDVILAQPLGMDRKGRREGRVVRVIEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
EDIMGARMGNVVVVEITTRPTRRTQAVGRIVEILGETMGTGIAVEIALRTHEIPHTWPEK
VTKEVADLKEEVPESAKQGRVDLRNLPLITIDGEDARDFDDAVYCQRKKGGGWRLWVAIA
DVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
EQGRLSSYKFYEAVMSSHARMTYTKVWKIIQGDEELREHYKPIVQDIEHLYELYQVLDKA
REQRGAIGFESEEAKFIFNAERRIERIEPVVRNDAHKLIEECMILANIAAARFVEKNEEP
ALYRIHDKPKEESVLNLRSVFNELGLTLPGGLTPEPADYARVMKEVEDRPDREMLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHRAIKYQIAKQEGHGSQRWTPT
GGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFMLDQIGQQFTGIITSVTGFGF
FVRLNDLFIDGLVHVSTLNNDYYQYDNVGQRLIGESSGQVYRLGDEVEVKVEAVSMDERT
IDFSLISTTRTARNPGKTARVRGLKGEKDKKNASSSKSRRRDASKDKNFEPDSAFKKGKS
SGRGKASKDNAVKDQVAKDKASSKRKKASSQTKKIEAKLKAKRAAKRDNA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagcagagaaatacgcctctccaattgctagt
cgcgaatatattttagaagaaatgaaaaaacgcacggcacccatgagccgtgaagattta
gcacaggcgttaaaaatttctggtgaagaagacttagaagcgttacgtcgccgtttaaga
gcaatggaacgtgatggtcaattagtttttacccgtcgccagtgttacgcattaccagaa
cgccttgatttgtggaaaggtaaggtaatcggtcatcgcgatggttatggttttttacgt
gcagaaggtcaaaaagatgacctttatctttcacaagatgaaatgaaaaaaacgatgcat
ggcgatgtgatccttgctcaacctttaggtatggatagaaaaggtcgtcgtgaaggtcgt
gttgttcgtgttattgaaccacgaaataaccaaattgtaggtcgctattttattgagtca
ggtatgggatttgttgtacctgatgatagccgtttaagctttgatattcttattcctaaa
gaagatatcatgggcgcacgaatgggaaatgtggttgttgttgaaatcacaacaagacct
actcgtcgtactcaggcagtagggcgtatcgttgagatcctaggcgaaacgatgggaaca
ggtattgcagttgaaattgccctgcgtactcatgagatccctcatacatggcctgaaaaa
gtcaccaaagaagttgctgatttaaaagaagaagtaccagaatcagctaagcaaggacgt
gtcgatttacggaacttacctttaattaccattgatggtgaagatgcgcgagatttcgat
gacgccgtttattgtcaacgcaaaaaaggtggtggctggcgtttatgggtcgcaatcgcg
gatgtgagctattatgtgcgtccacaaacagcattagatacagaagcgcgtagccgagga
aactctgtttacttcccttctcaagtcgtgccgatgttacctgaagttctgtctaatgga
ttatgttcattaaacccacaagttgaccgcttatgtatggtttgtgagatgacggtttct
gaacaaggacgcctttcttcttataaattctatgaagcggtgatgagttctcatgctcga
atgacctacaccaaagtgtggaaaatcattcaaggtgatgaagaactgcgtgaacattat
aaacctatcgttcaagatattgagcatctatacgaattgtatcaagtgctagataaagcg
cgtgagcaacgtggtgcgattggttttgagtcagaagaagcgaagtttatctttaatgca
gagcgtcgtattgagcgtattgagccagttgttcgtaatgatgcacacaaattgattgaa
gagtgcatgatccttgctaatatcgcagccgctcgctttgttgagaaaaacgaagaacct
gcactttatcgtattcatgataaacccaaagaagagagcgttctgaatttacgttcagtc
tttaatgaattagggttaacgctgccaggaggcttaacgccagagccagcagattacgcg
cgtgtcatgaaagaagttgaagaccgtcctgatcgtgaaatgctgcaaaccatgatcttg
cgttccatgaaacaagcgatttacgatcctgaaaatcgtgggcactttggtttagcacta
aaatcttacgcgcactttacctcgccaattcgtcgttatccggacttagcgttgcatcgc
gctattaaatatcaaattgcgaaacaagaaggtcacggttcacagcgctggacaccaaca
ggtggctaccatagtgatatggacaccatgttgcaattaggtgagcactgctctttaaca
gagcgccgtgctgatgaagcaacacgagatgtcgctgattggctgaagtgtgactttatg
ctggatcaaattggtcaacaatttacaggtattatcactagcgtaacgggctttggtttc
tttgttcgcttaaatgatctgtttattgatggtctggtgcatgtttctacattaaataat
gattactatcagtatgataatgtaggacaacgcttaattggtgagtcttcaggacaagtt
tatcgccttggtgatgaagttgaagtgaaagtggaagcggtcagtatggatgaacgtact
atcgacttctctttaatttcaacaacacgcactgcacgtaatccgggtaaaacagcccgt
gttcgtggactaaaaggtgaaaaagacaagaaaaacgctagttctagcaagtctcgtcgt
cgtgatgcaagcaaagataaaaactttgagccagatagtgccttcaaaaaaggcaaatca
tcaggtcgaggtaaggcgagcaaagataacgctgtaaaagaccaagttgcgaaagataaa
gcaagtagcaaacgtaagaaagcatcatcacaaaccaaaaagatagaggcaaaacttaaa
gctaaacgcgcagccaaacgcgataacgcataa
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