Proteus appendicitidis: QQS39_06920
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Entry
QQS39_06920 CDS
T09947
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
papp
Proteus appendicitidis
Pathway
papp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
papp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQS39_06920 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
papp03019
]
QQS39_06920 (rne)
03009 Ribosome biogenesis [BR:
papp03009
]
QQS39_06920 (rne)
Enzymes [BR:
papp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QQS39_06920 (rne)
Messenger RNA biogenesis [BR:
papp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQS39_06920 (rne)
Ribosome biogenesis [BR:
papp03009
]
Prokaryotic type
rRNA processing factors
QQS39_06920 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
WIV89730
UniProt:
A0ABY8YBA7
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All DBs
Position
complement(1513383..1516850)
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AA seq
1155 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAEAL
QQDLSYRLRHWDAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMA
RSHIEAIGRGDFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRMREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQSNVKVVIVPNDQMQ
TPHFSVIRVRKGEEITSLSYNLAQFHESQLNEAEDDVVTERKAPEQPAISAFGLQEEEPI
EATKSKKAPQPQAKPVKSEQAQGTGFFASIAKFFSNLFSSEPEPVVTPEKPQENKKENND
NRRDRRNNNNRRNNNNRRDRDNDRNRDNANSEDNRKNRNQKPQTTPTTEVSSEQEIAERE
ARRQQRREQRAEQRRRQEEKRQQQQEAAKAQAALAENDTVAKGNADEKKEEPRRPAMQRR
NRRQLTQSVRVTDNDNALAVVPVVTEKAVSEPPVATTQTKVAPTEKSAPKAVAVAKVEAN
EAQAVKALPDATKSQDDNKNEDNNGQDNVMPRRSRRSPRHLRVSGQRRRRYRDERTLTVS
PMPLAMAVASPELASGKVFIRYPITPISDAAFVENNVENNNDVSVENHIITHQDPQMVAI
APAVSEAIVADIAQEGSTESTYSVTVSTESTTEAVAEIIAVEPPKAESVETNNIIGSNVI
SDVINEVNTEEHVTRKENISAVLNTTEAYMHETSPQVETSIAPEEVAQDTVTPVESETST
PEQPQPVEAVIATEETVEQHKEVAVETVVAPATKAETVIENQPEASAIPVVDVETVTESK
PAEVVIRQEPVAVARQLHASSPMTKAPAANEAPVAIEIKAWEARPAFDKKGRTGAGGHCS
TNHASSGMTKAESQN
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgcccttgtcgat
gggcaacgtttgtacgatctggatatcgaaagccccggtcatgaacagaaaaaagcgaat
atctataaaggtaaaattactcgaattgaacccagcttagaagccgcttttgttgattat
ggtgcggaacgccacggtttccttcctatcaaagaaattgcccgcgaatactttcctagt
aattatcactcccatggtcgtcctaacatcaaagatgtcttaaaagaaggccaggaagtt
attgttcaagttgataaagaagagcgtggtaataaaggtgcagcattaaccacttttatc
agccttgcgggaagttatttggtattaatgccaaataatcctcgtgcaggtggtatttct
cgccgtattgaaggtgaagaccgtactgaactcaaagaagctttatcaagccttgaaatc
ccagatggtatgggtctgattgtacgtacagcaggtgttggtaaatctgccgaagcgcta
caacaagacttaagctatcgtttaagacactgggatgcaattaagaaagccgctgaaaat
cgccctgcgccattcttaatccatcaggaaagtaacgtaatcgttcgcgcattccgcgac
tacttacgtcctgatattggcgaaattttaattgataacgcaaaagtcgttgaaatggca
cgtagccatattgaagcgattggtcgtggtgattttgctagcaaaattcgccattacacc
ggtgcggtacctctgtttagccattaccagattgaatcacagattgaatctgcttttcag
cgtgaagttcgccttccttctggtggcgctttagttattgatacaactgaagcattaaca
gcgattgatatcaactcctcacgctcaacccgtggtggtgatatcgaagaaactgccttt
aatactaacttagaagcggctgacgaaattgcacgccaattacgtttacgcgacttgggt
ggtttaattgttatcgactttatcgacatgacgcctgtacgtcatcagcgtgaagttgaa
aacagaatgcgcgaagctgttcgccaagatcgcgctcgcattcaaattggacgcatctct
cgctttggcttattagagatgtctcgtcagcgtttaagcccttcattaggtgaatctagc
catcacgtttgtccgcgttgtttaggcaccggtactattcgtgataacgaatcactgtca
ctttctgtgttacgtcttattgaagaagaagctcttaaagaaaatacacatgaagtacac
gcaattgtgcctgttcaaatcgcctcttatttgcttaacgaaaaacgtaaagcagtaaca
gacattgaattacgtcaatctaatgtcaaagtggttattgttcctaatgaccaaatgcaa
acgcctcatttctctgttattcgtgtacgtaaaggcgaagaaattacctctctgagctac
aacttagcgcaattccatgagagtcagttaaatgaagctgaggacgatgttgttacagag
cgtaaagcacctgaacaacctgctatttcagcctttggattgcaagaagaagagcctatt
gaagcaacgaaaagcaaaaaagcacctcaacctcaagctaaacctgttaaatcagaacaa
gctcaaggtacaggtttctttgcctctatcgcaaaattcttctctaacttatttagtagt
gagccagaacctgtagtaacaccagaaaaaccacaggaaaataagaaagagaataacgac
aatcgtcgtgatcgtcgtaataacaataatcgacgtaacaacaataatcgccgtgaccgt
gataacgatcgtaatcgtgataacgcaaatagcgaagacaatcgcaaaaatcgcaatcaa
aaaccacaaacaacgccaacgactgaagttagtagtgagcaagagattgcagagcgcgaa
gctcgtcgccagcagcgtcgtgaacaacgtgcggaacagcgtcgtcgtcaagaagaaaaa
cgtcaacagcaacaagaagcggctaaagcacaagcggctcttgctgaaaatgataccgtt
gcaaaaggtaatgctgatgagaagaaagaagaacctcgtcgccctgctatgcaacgccgt
aatcgtcgtcaattaacacaatctgtacgcgtgactgacaatgataatgcattagctgtt
gtacctgttgtgactgaaaaagccgtttctgagccgcctgttgcaacaacacaaactaaa
gttgcgccaacagaaaaatcagcgcctaaagcagttgctgttgcgaaagttgaagcaaat
gaagcacaagctgtaaaagcgttaccagatgcaactaaatcacaagatgacaataaaaac
gaagacaataacgggcaagataatgttatgccacgtcgttctcgccgttcgcctcgtcat
ttacgtgtaagtggtcaacgtcgtcgtcgctatcgtgatgagcgtaccttaacagtatca
ccaatgcctctggcaatggcggtggcttctcctgagcttgcttcaggtaaagtcttcatt
cgctacccaatcacaccaataagtgatgcagcatttgttgaaaataatgttgaaaataac
aatgacgtttctgttgaaaaccacattattactcatcaagatccacaaatggtcgctatc
gcacccgcggtttcagaagccattgttgctgatattgcacaggaaggatctacagaatcg
acttattctgttacggttagcactgaatcaaccacagaggctgttgctgaaattattgca
gtagagccgccaaaagcagagtctgttgaaacgaataacatcattggaagcaacgttatc
agtgatgtaattaatgaagtgaatacagaagagcacgttactcgtaaagagaacatttca
gcggtattaaataccactgaagcttacatgcatgaaacttcaccacaagttgaaacaagt
atcgcgccagaagaagttgcacaagatacagttacaccagtagaaagtgaaacttcaaca
cctgaacaacctcagcctgttgaagcagtaatagcaactgaagaaactgttgaacaacac
aaagaagttgctgttgaaactgttgttgcccctgccactaaagctgaaactgttattgaa
aatcagccagaagcaagtgcaatcccagttgtggatgttgaaacagtaaccgagagcaaa
ccagctgaagttgttattcgccaagagcctgttgcagttgcacgccaactacatgcaagc
tctccaatgacaaaagcaccagctgctaatgaagctcctgtggcaattgaaatcaaagcg
tgggaagcacgtccagcttttgataagaaaggtcgcactggtgcaggtggacattgttct
actaatcacgcttcttcaggaatgactaaagctgaaagtcaaaactga
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