Proteus appendicitidis: QQS39_15530
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Entry
QQS39_15530 CDS
T09947
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
papp
Proteus appendicitidis
Pathway
papp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
papp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QQS39_15530 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
papp03021
]
QQS39_15530 (rpoD)
Transcription machinery [BR:
papp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QQS39_15530 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
CDC45
Motif
Other DBs
NCBI-ProteinID:
WIV90317
UniProt:
A0ABY8YCZ1
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Position
3377251..3379107
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AA seq
618 aa
AA seq
DB search
MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENSNDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITAFIDPNAEEMAESED
VNLGKEDDEVADDAEDEDEDEDEDGDNDSDSDDDNSIDPELARQKFTELREQYEKTRQTI
KAKGRNHKDTELEILLLSEIFKQFRLVPKQFDYLVNNMRDMMDRVRAQERHIMRLCVDQV
KMPKKNFITLFTGNETNDTWFTAARAMNKPWSEKLAGIEEEVQRSLQKLQQIEVETGLTI
EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA
TSESLRSATHEVLAGLTLREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEVLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgttactaaaggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccagatgattaacgacatgggcattcaggttatggaagaagcacct
gatgccgatgatctgatgctggcagaaaattcaaatgatactgatgatgatgctgcagaa
gccgcagctcaggtgctttctagtgtagaatctgagattggccgtacaaccgaccctgtg
cgtatgtatatgcgcgaaatgggtaccgttgaactgctcacccgggaaggtgaaattgat
atcgcaaaacgcattgaagatggtattaaccaagttcaatgttctgttgcagaatatcct
gaagcaattacatatcttcttgaacagtatgatcgtgttgaagctggcgaagcacgtctt
tcagacttaattactgcgtttattgaccctaatgccgaagaaatggcagaaagtgaagat
gtcaatttaggcaaagaagatgatgaagttgccgatgacgctgaagacgaagatgaagat
gaagacgaagatggcgacaatgacagcgatagcgatgacgataacagcatcgatcctgaa
ttagcgcgccagaagtttactgagcttcgtgagcaatacgaaaaaactcgccaaactatc
aaggcgaaaggtcgtaaccacaaagatacagagcttgaaatcttattgttatctgaaatt
ttcaaacagttccgtttagtaccgaaacagtttgattatttggttaacaatatgcgtgac
atgatggacagagttcgtgctcaagagcgtcacatcatgcgtctttgtgttgatcaagtt
aagatgccaaagaaaaacttcattacgctgtttacaggtaacgaaaccaatgacacatgg
ttcactgctgctcgtgcaatgaataagccttggtctgaaaagctggcaggtattgaagaa
gaagtacaacgcagtctacaaaaactgcaacaaattgaagttgaaactggactgacaatc
gaacaggttaaagatattaaccgtcgtatgtctatcggtgaagcaaaagcacgtcgtgcg
aaaaaagagatggtcgaagcgaacttacgtctcgttatctctatagcgaaaaaatatacc
aaccgtggtttacagttccttgacctcattcaggaagggaatatcggtctgatgaaagcg
gttgataaatttgaataccgtcgtggttataaattctcaacttatgcaacatggtggatc
cgtcaggcaattactcgttcaatcgcggatcaggcgcgtacaattcgtatccctgttcac
atgatcgaaacgattaataaactgaaccgtatctcgcgtcaaatgttgcaagagatggga
cgagagccttcaccagaagagcttgcagaacgcatgctgatgcctgaagataaaatccgt
aaggtactgaaaatcgctaaagaaccaatctccatggaaacgccaatcggtgacgatgaa
gattcacatttaggtgattttatcgaggatactactctcgaattaccactggattctgca
acatcagaaagcttacgttcagcaactcacgaagtgttagcaggtttaacattacgtgaa
gcgaaagtcctgcgtatgcgttttggtatcgatatgaataccgaccataccttggaagaa
gtgggtaaacagtttgatgttacccgtgaacgtattcgtcagattgaagcgaaggctctg
cgtaaattacgccacccaagccgttctgaagtgttacgtagcttccttgatgagtaa
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