Pantoea ananatis PA13: PAGR_g0688
Help
Entry
PAGR_g0688 CDS
T01970
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paq
Pantoea ananatis PA13
Pathway
paq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PAGR_g0688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paq03021
]
PAGR_g0688
Transcription machinery [BR:
paq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PAGR_g0688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
HTH_SUN2
DNA_ligase_A_N
Eclosion
Motif
Other DBs
NCBI-ProteinID:
AER31224
LinkDB
All DBs
Position
complement(718036..719880)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELSEADRNDDEDDDEESDDDSSDDDNSIDPELAREKFSDLRTQYETTRDVIKSKG
RSHAASVAEIQNLSDVFKQFRLVPKQFDYLVNNMREMMERVRTQERLIMKLCIEVCKMPK
KNFITLFTGNETNESWFKAALAMNKPWSEKLLDVQDDVMRSLQKLAQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtggttgaagaagccccg
gacgccgacgatctgatgctgaatgaaaacagctccgatactgacgaagatgccgcggaa
gctgccgctcaggtattatccagcgttgaatctgaaattggccgcaccactgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgctgacccgcgaaggcgaaatcgac
atcgcgaagcgtatcgaagacggtattaaccaggttcagtgttccgttgctgaatacccg
gaagccattacctacctgctggatcagtacgatcgcgttgaagcaggcgagtcgcgcctg
tcagatttaatcactggctttgttgatcctaacgctgaagaagacctggcaccgaccgcc
actcacgtgggttctgagctgtctgaagccgatcgtaacgacgacgaagatgacgacgaa
gagagcgatgacgacagctctgacgacgataactctatcgatccagaactggcgcgcgag
aagttctctgacctgcgcacgcagtacgaaaccacgcgtgacgtgatcaaaagcaaaggt
cgcagccatgctgcctcggttgccgagatccagaacctgtctgacgtctttaagcagttc
cgcctggtaccgaagcagttcgactacctcgtgaacaacatgcgtgaaatgatggagcgt
gtccgtactcaggaacgtttgatcatgaagctgtgtattgaagtgtgcaaaatgccgaag
aaaaacttcattacgctgttcaccggtaacgagactaacgagagctggttcaaagccgca
ctggccatgaacaagccgtggtctgaaaaactgctggacgtgcaggatgacgtgatgcgt
tctctgcagaaactggcccagattgaagaagaaaccggcctgaccatcgagcaggtgaaa
gacatcaaccgtcgtatgtcgatcggtgaagcgaaagcccgccgcgcgaagaaagagatg
gttgaagctaacctgcgtctggtcatttccatcgcgaagaaatacaccaaccgtggtctg
cagttcctggatctgattcaggaaggtaacatcggtctgatgaaagcggttgataagttc
gaataccgtcgcggctataagttctcaacttatgccacatggtggattcgtcaggcgatt
acccgttctatcgctgaccaggcgcgtaccatccgtattccggtgcatatgattgagacg
atcaacaaactcaaccgtatctcgcgccagatgctgcaggagatgggacgcgagccgacg
ccagaagaactggctgagcgcatgttgatgcctgaagataagatccgcaaggtgctgaag
attgccaaagagcctatctctatggagacgccgattggtgatgatgaagattcacatctg
ggtgattttatcgaagacaccacgctggagctgccgctggactctgccacctctgagagc
ctgcgttctgccacccatgacgtgctggctggcctgaccgcccgtgaagccaaagtgctg
cgcatgcgtttcggcatcgatatgaacaccgaccacacgttagaagaagtaggcaaacag
tttgacgttactcgtgagcgtatccgtcagattgaagcgaaagccctacgtaaactgcgc
catccgagccgctcggaagtgctgcgtagcttcctcgacgactaa
DBGET
integrated database retrieval system
