Pantoea ananatis PA13: PAGR_g0928
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Entry
PAGR_g0928 CDS
T01970
Name
(GenBank) exodeoxyribonuclease V beta chain RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PAGR_g0928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paq03400
]
PAGR_g0928
Enzymes [BR:
paq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PAGR_g0928
DNA repair and recombination proteins [BR:
paq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PAGR_g0928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
DUF4378
Pox_P4B
Motif
Other DBs
NCBI-ProteinID:
AER31459
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All DBs
Position
979549..983088
Genome browser
AA seq
1179 aa
AA seq
DB search
MMQSRPESLNPLTLPLNGERLIEASAGTGKTFTIGLLYLRLLLGLGGENAWRRPLSVEEI
LVVTFTEAATAELRGRIRDNIHQLRLACVRGKSHNPMHQQLMEQIPDLPQAASQLLAAER
QMDEAAIFTIHGFCQRMLNLNAFESGMLFEQELIENEQTLLRQATADFWRRQCYPLSLDV
ARVIAAEWSGPDSLLTTLRPWLQGESPTLRRPPRPEETLASRHAANLERINALKQQWQAA
SADVEGLISASGVDKRSYSSKHLPNWVAKVTQWALDDTLDYLLPKELERFGQQVLHEKTK
KGEAPQHALFDAVDRFLAEPLTLRDVIIWQALTEVREAVQREKRQRALLGFDDLLSRLDE
ALQQPGGALLAETIRGRFPVALIDEFQDTDPQQYRIFRTLYLHQPELALLLIGDPKQAIY
AFRGADIFTYLRARSEVSAHYTLDTNWRSSPDMVDSVNRLFSQVDSPFLFSSIPFLPVSP
AAPNQALKLIYQQQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGQALI
GKGDALQPVKASDITVLVRSRNEASLIRDALNSLSIPSVYLSSRDSVYTTPEARELLWLL
QAVQSPEQERLLRSALATSIFAIDAAELDALAQNERHWDALVEQFVSWQQIWHQRGVLPM
LRDVMITRQLAENMLASDNGERRLTDLMHLGELLQEAAVQLDSTHALVRFLAQQIARPDS
QAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFREAASALYHDRESFAAMLDV
QGDEYSLTLAEEERLAEDLRLLYVALTRSVHHCSVGIAPLIKGARKKAGESDLHKSALGF
LVQRGEIADAAQLSQHLQALEGAGIEVISSALQPGAIWHEGLGSNDALSSREMTRALADS
WRVTSYSGLQQHGSSPLLDALPKFDIDAAGETADEEDTLLTPHHFPRGAAPGTFLHGLFE
SIDFTEPPEALWLEDQLQQNGYSLSWLPVIQQWIARVLTTPLNKEGVTLSSINSRDRLIE
MEFYLPINNLLTATDLDALVRRYDPLSQRGPALDFRQVKGMLKGFIDLVFRWQGKYYLLD
YKSNWLGESRAAYTPEAMEQAMIDHRYDLQYQLYTLALHRYLQHRLAGYDYQQHFGGVFY
LFLRGVDGSPDDNGIFATRPDPAFIDEMDRLFGNTEEML
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagtcaagacccgagtcgcttaacccgttaacgctgccgctgaacggtgaacgg
ttaattgaggcgtcagcggggaccggtaaaacctttacgatcggcctgctctatttacgt
ctgctattagggctgggcggtgagaacgcctggcgcaggccgctgtccgtcgaagagatt
ctggtggtgacctttaccgaagccgctacggctgaactgcgcggtcgtatccgtgacaat
atccatcagctacgtctggcctgcgtgcgtggtaaaagccataaccccatgcaccaacag
ctgatggagcagatcccagacctgccccaggccgcgtcacaactgctggcggccgagcga
caaatggatgaggcggcaatttttaccatccacggcttttgtcagcgcatgcttaacctg
aacgcttttgaatcgggcatgctgttcgagcaggaactgattgaaaacgaacaaacgctg
ctccgacaggccacggccgatttctggcgtcgccagtgttatcccctgtcgctggatgtg
gccagagtcattgcggcggagtggagcgggccggacagtttactgaccacgctgcggccc
tggctgcagggggagtcaccgacgctcaggcgcccacctcgcccagaggaaacgctggcc
tcccgccatgcggccaatcttgagcgaattaacgcccttaagcagcagtggcaggctgcc
agcgccgatgtggaagggctcattagcgcgtctggtgttgataagcgcagttatagcagt
aagcacttacctaactgggtggctaaagtcacccagtgggcactcgatgacacgcttgat
tacctgctgcccaaagagctggagcgctttgggcagcaggtgctgcacgagaagaccaaa
aagggcgaggcaccgcaacatgcattgtttgatgcggtagatcgctttctggccgaaccg
ctgacgttgcgagacgtcattatctggcaggccctgaccgaggtccgcgaggcggtccag
cgcgaaaagcgtcagcgcgcactactgggctttgatgacctgttgagccgtctggatgag
gcgcttcaacagccgggcggggcactgctggcggaaacgattcgcgggcgcttcccggtc
gcgctgattgatgaattccaggataccgatccgcagcagtatcgtatctttcgtacgctg
tatctccatcagccagagttagccctgctgcttattggcgatcccaaacaggcgatttat
gccttccgtggtgcggatatctttacctatctgcgcgcccgtagtgaagttagtgctcac
tacacattagatactaactggcgctcctcgcctgacatggtggacagcgttaaccggctg
ttttcacaggttgattcgccgtttctgttctcttccattccttttctcccggtcagtccg
gctgcgcctaatcaggccctgaagctgatttatcagcagcaaccgcagcccgcgctgcgc
ttctggcttcagccgggtgaaggtgtgggagtaagtgattaccaacaatttatggcgcag
cagtgtgccgcggatatcagccgctggctggtagccggacagcaggggcaggcgctgatt
ggtaaaggcgatgccctgcagccggttaaggcatcggacattaccgtgctggtgcgcagc
cgtaacgaggccagcctgatccgcgatgcgctaaacagcctgtcgattccctccgtttat
ctttccagccgcgacagcgtttacaccacgccggaagcgcgtgaactgttatggctcctg
caggcggttcagtcacctgaacaggagcgattgctgcgcagcgcgctggcgacgtccatc
tttgctattgatgccgccgaactggacgcgctggcgcagaacgaacgccactgggatgca
ctggtggagcagtttgtcagctggcagcaaatctggcatcagcgcggcgttttacccatg
ctgcgcgacgtgatgatcacgcggcaactggccgaaaatatgctggcatcagacaatggc
gaacggcgcttaaccgatctgatgcacctgggtgaactcctgcaggaagcggcggttcag
ctcgacagcacccatgcgctggtgcgttttctggcacagcaaattgcccgccccgatagc
caggcggccagtcagcaactgcgtcttgaaagcgatcgtcatctggtgcaaatcgtcacc
attcataaatcgaaaggattgcagtatcccctggtctggctgccctttgccgccggattc
cgcgaggccgccagtgcgctgtatcacgatcgtgaaagctttgctgcgatgctggacgtg
cagggggatgagtacagcctgacgctggcagaagaggagcgcctggcagaggatttacgc
ctgctctacgtggcactgacccgttcggttcaccactgcagcgtaggtattgcaccgctg
attaagggcgcgcgtaaaaaagcgggtgaaagcgacttgcacaaaagcgcgctcggtttc
ctggtgcagcgcggcgaaatcgccgatgccgcgcagctcagtcagcatctgcaggcgctt
gagggcgcgggaattgaggttatcagcagcgcgctccagcccggggcgatctggcatgaa
ggcctgggcagcaacgatgcgctgagcagtcgggaaatgacgcgagcgctggccgacagc
tggcgcgtcaccagttattcgggtttgcagcagcacggtagctcaccgctgctggacgcc
ttgcctaaatttgatatcgacgccgcaggcgaaacggcagacgaagaggataccctgttg
acgccgcaccattttccgcgcggtgcggcacccgggacgtttctccacggattgtttgaa
tcaatcgatttcaccgaaccgccagaggcgctgtggctggaagatcagctccagcaaaac
gggtattcactcagttggcttccggtcattcagcagtggattgcgcgcgtcctgacaacg
ccgcttaacaaggaaggcgtaacgctgtccagtattaacagccgcgaccggctgattgaa
atggaattttatctcccgatcaataacctgctgaccgcgaccgatctggatgcgctggta
cgccggtacgatccgctgtcgcagcgcggtccggcactggatttccgccaggtgaaaggc
atgttgaaagggttcattgatttggtgttccgctggcagggaaaatactatctgctggat
tataaatcgaactggctgggggaaagtcgtgccgcatacacgcccgaggcgatggagcag
gcgatgatcgaccaccgctacgatctgcaataccagctgtataccctggcgctgcaccgt
tatctccagcaccgtctggcaggctatgactaccaacagcatttcggcggcgtcttttac
ctgtttctgcgtggcgtcgatggcagcccggacgacaacggcattttcgccacccgaccc
gacccggcgtttattgatgaaatggacaggctgtttggcaatacagaggaaatgttatga
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