Pantoea ananatis PA13: PAGR_g2671
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Entry
PAGR_g2671 CDS
T01970
Name
(GenBank) ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGR_g2671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g2671
03009 Ribosome biogenesis [BR:
paq03009
]
PAGR_g2671
Enzymes [BR:
paq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAGR_g2671
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAGR_g2671
Ribosome biogenesis [BR:
paq03009
]
Prokaryotic type
rRNA processing factors
PAGR_g2671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
TMEM151
Motif
Other DBs
NCBI-ProteinID:
AER33169
LinkDB
All DBs
Position
2889548..2892868
Genome browser
AA seq
1106 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRME
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PAEASPEVATPSATVTQPAPAAAPASEGFVSRLLSGLKKLFAGEPAPAAVEPVAEVTAPQ
KTSEDENGNPRGDRRNNRRNNNRRERTPRNGDNAQQRESRDNRDARDNRDNRDNRDNRDN
RGESRDNREPREDNRRNKRQAQPNEVRDDRPVLSDEARQQRDEQQQQRREQRAERQRRRQ
EEKRAQQDANSAVEQTAEAVAPAAVDAQEDERVQVMPRRKPRQLTQKVRVGDNNDQPQAA
AVESAESADVQKVQPVVETSQVEETEENEGRDNANMPRRSRRSPRHLRVSGQRRRRYRDE
RYPTQSAMPLDAAAASPEMASGKVWIRYPVAQANEEQIVQDAPQSTPDYSREETAPAVAL
PVATEEAPASQAAPVQIAEPQADAPVTVVNTDDTQAIEAPVHHEPSVIPAAAEAGAEAIA
QQAQPADAVEAPEVSVPEVNVPVVAESAPEETADEHAGTEVSAATEAQVEEVLHAPVAAE
EAITPVSEPHAPVAARDIPVEALKANAETRWKHFASAPMTKAPAPVWQPEPARQSDWQRP
AFKFEGRGSAGGHSATHQATAPATKP
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaggagttgcgcgttgccctggttgat
ggtcaacgtctgtacgatctggatatcgaaagcccaggacacgaacagaaaaaagccaat
atctacaaaggtaaaatcacccgtatcgaacccagccttgaagcggccttcgtcgattac
ggtgcagaacgtcacggtttcctccctctgaaagaaatttcccgcgaatacttccctgct
aattacaactcacacggtcgtccgaacattaaagacgtgctgcgtgaaggtcaggaagtc
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctcactacctttatc
tctctggcaggcagctatctggtattgatgccaaataacccgcgcgcgggtgggatttca
cgtcggattgaaggcgatgaccgtaccgaactgaaagaggcgctgtcggcgctggaactc
cccgatggcatggggctgattgttcgcacggcgggcgtcggtaaatcagccgaatcgctg
cagtgggaccttagcttccgtctgaagcattgggaagccatcaaaaaagcggctgacagc
cgcgcggccccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgccttccgcgat
tatctgcgtcaggatatcggtgagattcttatcgataaccctaaagtgctggagctggca
cgtcagcatatcgccgcgctgggccgtccggactttagcagcaaaattaagctctacacc
ggtgagattccgctgttcagccattaccaaatcgaatcgcaaatcgaatccgctttccag
cgtgaagttcgcttgccgtcaggcggctcaatcgttatcgacagtaccgaagcgcttacc
gccatcgatatcaactccgcccgtgccacgcgcggtggcgatattgaagaaaccgccttt
aataccaacctggaagcggccgacgaaattgctcgccagctgcgtctgcgcgacctgggc
ggcctgatcgttatcgacttcatcgatatgacaccggttcgtcaccagcgcgcggttgaa
aaccgtctacgtgaagccgtccgtcaggatcgcgcccgtattcaaatcagccatatttca
cgttttggcctgctggagatgtcccgccaacgcctcagcccgtccctgggcgagtccagc
caccatgtgtgtccacgttgtagcggcaccggcactattcgtgataacgaatctctctcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcat
gctatcgtgccggtcccggttgcctcttacctgctgaatgaaaaacgtgaagcggtaaat
gctatcgagaaacgtcagggcggcgtacgtgcggtcatcgtgccggacgaccggatggaa
accccgcactactccgttctgcgcgtgcgcaaaggcgaagaaacgcaaacgctgagctat
cacctgccgaaactgcatgaagccgagatggcgatgccatctgaagaggagcatgctgag
cgccgccgtccagagcagcctgctctcgcagcctttgtgatgcccgatgcgccgccagca
ccggccgaagcctcaccggaagtggccacaccttcagcgactgtgacgcaacccgcacca
gcggccgcgccggccagtgaaggttttgtcagccgtctgctgagcggattgaaaaaactg
tttgctggcgaacctgctccggcggctgtcgagccggttgccgaggtgacggccccgcag
aaaaccagcgaggacgagaacggcaacccgcgtggcgatcgtcgtaataatcgtcgcaac
aacaaccgtcgcgaacgtaccccgcgcaacggtgataacgcacaacagcgcgaatctcgc
gataaccgtgacgctcgtgataaccgtgataaccgtgataaccgtgataaccgtgataac
cgtggtgagtctcgagataatcgcgagccgcgtgaagacaatcgtcgtaacaagcgtcag
gcccagcctaatgaggtgcgtgacgatcgtccggtactgagcgatgaagcgcgccagcag
cgtgatgagcagcagcaacagcgccgcgaacaacgtgctgaacgtcagcgtcgtcgtcag
gaagagaaacgtgctcagcaggacgctaacagcgcggtggaacaaaccgccgaagcggtc
gcgcctgctgctgtggatgcgcaggaagacgagcgcgttcaggtgatgccacgtcgcaaa
ccgcgccagctgacgcagaaagtccgcgttggtgataacaatgaccagccgcaggccgcc
gccgttgaatcagccgaatcggctgacgttcaaaaggtgcagcctgttgtcgaaacgtcg
caggttgaagagacggaggagaacgaaggtcgcgataatgccaatatgccacgtcgttca
cgccgttcacctcgccatctgcgcgtaagtggtcagcgtcgccgtcgttaccgtgatgaa
cgttatccgactcagtccgcgatgcctttagacgctgctgcggcttcgcctgaaatggcg
tccggcaaagtctggattcgctacccggtcgcgcaagcgaatgaagagcaaatcgttcag
gatgcgcctcaatcgacaccggactacagccgtgaagagactgcacctgctgttgccctg
cctgtcgccactgaggaagcgccggcttcacaggctgcgccagtacaaatcgcagagccg
caggctgacgccccggttaccgtggtgaatactgacgatactcaggccattgaagccccg
gttcatcatgaaccttcggtgattccagccgccgctgaagccggtgctgaagcgatcgcg
caacaggctcagcctgctgacgctgtcgaagcgccggaagtgagcgtgccggaggtgaac
gtgccggttgtcgcagaatccgcgcctgaagaaacggcggatgagcatgcgggcactgaa
gtcagcgctgcgaccgaagcgcaggtggaagaggttttacacgcgcctgttgccgctgag
gaagccattacgccggttagtgaacctcatgcacctgttgccgcacgcgacatccctgtt
gaggcattaaaagccaacgccgaaacgcgctggaagcactttgcttctgcaccgatgacc
aaggcgcctgcgccagtgtggcaacccgagcctgcccgtcaaagtgactggcaacgtccg
gcctttaaatttgagggcagaggttctgctggcggccacagcgccacccatcaggctact
gcacctgccaccaagccgtaa
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