Pantoea ananatis PA13: PAGR_g2927
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Entry
PAGR_g2927 CDS
T01970
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGR_g2927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g2927
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAGR_g2927
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGR_g2927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
DUF6256
Motif
Other DBs
NCBI-ProteinID:
AER33423
LinkDB
All DBs
Position
complement(3176132..3177481)
Genome browser
AA seq
449 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL
QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLI
GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDI
ERLLKREIPRLAVPGYEPDPSIKAEPIVNGRQSQQPRGRGRSQGGQGAGAARPQGDKRSQ
PRRQGPAAGPSDKPAARPRRPAPKRSGNA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcctgagtgccgatattttgcgtgcggttgctgagcaaggc
tacagcgaaccgactcctatccagcgccaggcgattcctgtggtgctgtccggccgcgat
ctgctggcaagtgcgcagaccggcaccggcaaaacggccggattcacgctgcctttacta
cagaagctgtcggcgaataccggcgcagtacgtggacgtcgtccggtgcgtgcgctgatc
ctcacgcctacccgtgaactggccgctcaggtcggggaaaacgttgttgaatacagtaag
tatttaccgcttcgttcgctggtggtgtttggtggtgtcagcattaacccgcagatgatg
aagctgcgcggcggggtcgatattctggtggcaacaccgggccgtttactggacctggtc
catcagaacgcggttgacctctctcaggtggaagtgctggttctggatgaggccgatcgt
atgctcgatatgggctttatccacgatattcgccgtgtgctggcaaaactgcctgccaaa
cgtcagaacctgctgttctctgccaccttctcggacgagattaaaaccctggcagaaaaa
ctgctgcataacccggagcaggtggaagtggcacgccgcaacaccgcttcggagcaggtt
tctcaacaggtgcattttgttgataagaaacgcaaacgggaactgctgtcgcagctgatc
ggcgaaggtaactggcagcaggtgctggtgtttacccgaaccaagcatggggctaaccac
cttgcagaacagttgggtaaagacggtattaccgctgcggcgattcacggcaacaagagt
cagggtgcacgtacgcgcgcactggctgattttaaatccggcgcaattcgcgtgctggtg
gctaccgatatcgcggcccgtggcctggatattgaagaactcccacacgtcgtaaactat
gagctgccaaacgtagcggaagactatgtgcatcgtattggtcgtaccggccgtgcggcg
gcaaccggcgtcgcactgtcactggtgtgcgtggatgaacacaaactgctgcgcgatatt
gaacgtctgcttaagcgtgaaattccgcgtctggccgtaccgggctatgagccggatcca
agcatcaaagcggaacctatcgtgaatggccgtcagtcacagcagccacgcggccgtggt
cgcagccagggcggacagggtgcaggcgctgcgcgtccgcaaggggacaagcgttcacag
ccccgtcgtcagggaccggcagcgggcccgtctgacaagccagccgcgcgtccacgtcgc
ccagcgcctaagcgtagcggaaacgcctga
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