Pantoea ananatis PA13: PAGR_g3254
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Entry
PAGR_g3254 CDS
T01970
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
paq
Pantoea ananatis PA13
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paq03400
]
PAGR_g3254
DNA repair and recombination proteins [BR:
paq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PAGR_g3254
Archaeal homologous recombinant proteins
PAGR_g3254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_23
AAA_29
AAA_21
ABC_tran
MobB
cobW
nSTAND3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AER33746
LinkDB
All DBs
Position
3510845..3514519
Genome browser
AA seq
1224 aa
AA seq
DB search
MKILTLRFKNLNALKGEWFIDFRTEPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGAISQGHNPLMTRDCAECLAEVEFEIKGEAWRAFWSQNRARGTADGKLQAPRVELARCA
DNQIVADKVGDKLKLTETLSGLDFERFTRSMMLSQGQFAAFLNAKANERAELLEELTGTE
IYGLVSMAAFERHKEAKNALELMRSRADGMALLDEATRAGLQQQEAALTEAEQQLSRQFD
TAQRQQQWLQLAQQLSADAEQVNAARQAADAASQAAEADRQRLARSEPAEKLRGALQQRD
NLQTERTELQQRQQQLNQQMQAAAHEQQQLQQRYQETEAAREQVRLQQHQQETLLSGQVI
PLDQALSALQQQIQQLQHETAQQQASCTQREQAMQTEQYKVSDLQQALAQQQSRRQQLAD
MPVWGENLPLWQDRFAQLARHETDQAASAQQIQQQALQLHQRQQQVEQLQQQLAPLKQAG
QLTQQTLSDAEQALTSLHKAHPPEALRQALKQLTQQRDARQTLTLLAAQWQPLHQQRGQY
EKRLQDLEKACQQAEAELLMLRETWKREKQQLTDVEKICQLESHIADLEEHRARLEAGQP
CPLCGSCEHPAVETYRTLEVSANQQRKAVLQKQVEALSETGTAKNEQIKHLKGQQQSLRD
ELASIMQQLDALTQRWQALSGELALTFTLNDTDALDHWLQAQSRQEQALTSQTETLEHAE
RTYQAAKEQHLQQQQTQQQHQQTLQLAQQQLENEHQALLTIQRHHQQAQANAQPLQEGLA
QQFAGFGLTLPDSAQRDSWLAEQQQRWQQWQESERLLANLQPQLARAESQADALRQQLQL
EQQRLNQQQQQLAALDQQYREKRQQREALFGDRDVIQARRQMQESVEHHEAQLTQQRERL
QQSQAEASRLHGQLTLLESQLHRLGTRLTDAEQHFNAALAAAEFPDEASLRAALLDEHEA
QQLRQRLQQIDQHLLHQQSRLAELQQRLATHEQAKPDKMPESADALTTQLEALRHSLREN
ASQQGQLQQQLQSDASLRTQQQTLLAQIAQEETTLAQWALLNDLIGSATGDKFRRFAQGL
TLDHLVALANRQLDRLHGRYLLQRRAIDALELDVVDTWQADSARDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDAETLDTALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVRKMNGLGYSKLELPGT
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctcacgctgcgattcaaaaacctgaatgcgctgaaaggagaatggtttatc
gattttcgcaccgaacctttcgccagtaatggtctgtttgccattaccggcgcgacaggt
gccggtaaaaccaccttactggacgctatctgcctggcgctgtatcaccagacgccgcgc
ctgggtgcgatttctcagggccacaacccgctgatgacgcgcgactgcgccgaatgcctg
gccgaagtcgagtttgaaatcaaaggcgaggcctggcgggcattctggagccagaaccgc
gcacgaggcacggccgacggcaaactgcaggctccccgcgtcgagctggctcgctgcgca
gataatcagatcgttgcagacaaagtgggcgacaagctcaagcttaccgaaacgcttagc
ggcctggattttgaacgttttacccgttcaatgatgctgtcacagggccagttcgccgca
tttcttaacgccaaagcgaatgagcgcgcagagctgctggaagagctgaccggaacggaa
atttacgggctggtttccatggccgcgtttgagcgccataaagaagccaaaaatgcgctg
gaactgatgcgcagtcgggcagacggcatggcactgcttgatgaggcgacccgcgccggg
ctgcagcaacaggaggcagccctgactgaggccgagcagcaactcagccgtcagtttgac
accgctcagcggcagcagcagtggctgcagctggcacagcagctgagcgcggatgctgaa
caggtgaacgccgcccgtcaggccgccgacgcggcgagtcaggcggcagaggccgatcgc
cagcgtctggcacgaagtgaaccggcagaaaaactgcgcggtgcgctgcaacagcgcgac
aacctgcagactgaacgcacggagctgcaacagcgtcagcagcagttaaaccagcagatg
caggcggcggcccacgagcagcagcagttgcagcagcgttatcaggaaaccgaagcggcg
cgcgaacaggtgcgtttgcaacagcaccagcaggaaacgctactgagcggacaggttatt
ccactcgatcaggcgctctcggccctgcagcagcaaattcaacagctgcagcatgaaacc
gcacagcagcaggcgagctgtacgcagcgtgaacaggcgatgcaaaccgagcaatataag
gtcagcgatctccagcaggcgctggcacagcagcagtcgcgtcggcaacagctggcggat
atgccggtttggggcgaaaatcttccgctgtggcaggaccgctttgctcaactggcccgc
catgaaaccgatcaggcggcgtcggcgcagcagattcagcaacaggcactgcagcttcat
cagcgccagcagcaggtcgaacagctgcaacaacagcttgcgccattgaagcaggccggg
cagcttacgcagcagaccttgtctgacgctgagcaagcactaacatcgcttcataaggcg
catcctcccgaagccttgcgtcaggccttaaagcagttaactcaacagcgtgacgcacgt
cagacgctgacgttacttgcagcccagtggcagccgctacatcagcagcgcggtcagtat
gaaaaacggttacaggatctggaaaaagcctgccagcaggctgaggctgaattactgatg
ctgcgggaaacatggaagcgggagaaacagcaactcaccgatgtggagaagatttgccag
cttgaaagccatattgccgatctggaagaacaccgggcgcggctggaggccgggcaaccc
tgccctttatgcggctcctgcgaacatcccgcggttgaaacctaccgcacgctcgaagtc
agcgccaaccaacagcgcaaagccgtgctgcaaaaacaggtggaagcgctgagcgaaacc
ggtacggccaaaaatgagcagataaaacacctgaagggccagcagcagtctctgcgcgac
gagctcgccagtataatgcagcagctggatgcattgacccagcgctggcaggcactgagc
ggtgagcttgcgcttaccttcactctgaacgacaccgacgccctggaccactggctgcag
gcgcaaagccgtcaggaacaggcattaacttcgcagacagagacgctggaacacgccgag
cgaacgtatcaggcggcaaaagaacagcatctgcagcagcagcagacacagcagcaacac
cagcaaacgctgcagttggcgcaacagcagttggagaacgaacaccaggcgttactgact
atacagcgccatcaccaacaggctcaggcgaatgctcagccgctccaggaggggctggcg
caacaattcgcaggcttcggcctgacgctgcctgacagcgcacagcgcgacagctggctg
gctgaacagcaacagcgctggcagcagtggcaggaaagtgagcggttgcttgctaacttg
cagcctcagttggcgcgtgcggaaagccaggctgacgccctgcgccaacagctgcagctt
gagcagcagcgcctgaatcagcagcagcagcagctcgccgcactggaccagcaataccgc
gaaaaacgtcagcagcgtgaggcgttgtttggcgatcgggatgtcattcaggcccgtcgg
cagatgcaggagagcgtcgagcatcatgaggcgcagctgacgcagcagcgtgaacggctg
cagcagtctcaggctgaagccagccgcctccacggccaactgacgttgctggagagccag
ctacacaggttgggcactcgcctgacggacgctgagcagcacttcaacgctgcgctggct
gcggcggaattcccggacgaggcgagcctgcgggccgcgttgcttgacgagcatgaagcg
cagcagcttcgccagcgactgcagcagatcgatcagcatctgctccatcaacaatcccgc
ctggcagagctgcagcaacggctggcaacccatgagcaggctaaacccgataagatgcct
gagtccgccgatgcactgaccacacagctggaagcgttgcggcattccctgagggagaac
gccagtcagcagggacaactgcagcagcagttgcaaagcgacgccagcctgcggacccag
cagcaaacgttgctggcacagattgcgcaggaggaaaccacgctggcgcagtgggcgttg
cttaacgatctgatcggctcggcgaccggggataaattccggcgctttgcccagggactc
acgctcgatcacctggtggcgctggctaaccgccagctggatcgtctgcatggtcgctac
cttttacagcgccgcgccatcgatgcgctggaactggacgtggtggatacctggcaggcg
gacagcgcacgcgatacccgcacgctgtcaggtggagaaagctttctggtgagccttgcg
ctggcgctggcgctgtccgatctggtcagccataaaacgcgcatcgagtcattatttctt
gatgagggtttcggcacgctggacgcagagacgctggataccgccctggatgcgctggat
gcgctcaatgccagtggaaaaaccattggcgtgatcagtcacgtcgaggcgatgaaagag
cgcattccggtgcaaattaaggtccgcaaaatgaatggcctgggttacagcaaacttgaa
ttgccgggtacgtaa
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