Pantoea ananatis PA13: PAGR_g3425
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Entry
PAGR_g3425 CDS
T01970
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paq
Pantoea ananatis PA13
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g3425
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAGR_g3425
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAGR_g3425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
ResIII
Motif
Other DBs
NCBI-ProteinID:
AER33917
LinkDB
All DBs
Position
complement(3693710..3696205)
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AA seq
831 aa
AA seq
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MRAILTQPFVEFAVSDLPVSAVLPDLLSALNDASNILLAAPTGAGKSTWLPLQLLQHQAI
AGRIIMLEPRRLAARNVAQRLAEQLGEQPGATVGYRMRGESCAGPMTRLEVVTEGILTRM
LQQDPMLDGVSLVILDEFHERSLQADLALALLLDVQQGLREDLKILLMSATLDNARLAAL
LPNAPLITSEGRSYPVERRYTALSQTLRFEEAVAREVAQLLREETGSLLLFLPGVAEIER
VKRELEARVDADVDLTPLYGALPLAAQQRAILPAASGRRKVVLATNIAETSLTIEGIRLV
VDSAQERSALFDARSGVTRLQTQRVSQASMTQRAGRAGRVMPGICLHLVAQEQASRAPAQ
SEAEILHSDLTSLWLELLQWGCTRIDQLQWIDLPPEKHLRAARQQLLRLGALDDQGHLNA
QGRRMAQLGSDARLSAMLCAAGGDADAVASAALLVAILEDPPRSASVDLRDALYRPSPQW
QRRAQHWQKRIGVLGGRVDEDRFAALLTAGFSDRLARRRDNSGRYQLANGLGAMLDEQQA
LTRYEWLIAPTLLQGSSAPDARILLAMPVDIDTLTQQCPLLVEQRTEVEWDEEKGTLRTL
RREQIGELVLKTQPLARPDAEVLQAAMLRWISKKGLSVLGWTPASGQLRLRIQCAAQWLP
EEPWPQVDDASLLESLEHWLLPEMSGVRDLKSLQSVNLVSALLHLLTWSQRQRLDTVLPT
HYTVPTGSRLPIRYDADKPPALAVRIQEMFGEASNPTVAEGRVPLVLELLSPAQRPLQIT
RDLAAFWRGAYADVQKEMKGRYPKHLWPDDPASALPTRRTKKNTSQGGTSG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatcttaacacagccattcgtggagtttgcggtgagtgatctacccgtcagc
gcggtgttgcctgaccttctgagcgcgcttaacgacgcctcaaacatcctgctggccgcg
cccactggcgcaggtaaatccacctggttgccgcttcagcttttacagcatcaggcgata
gcgggacgcatcattatgctggagccgcgtcgccttgccgcacgtaatgtggcgcaacgg
ctggcagaacagttgggtgaacaacccggcgcgaccgtaggctaccgtatgcgtggcgaa
agctgcgcagggccgatgacccggcttgaagtggtgaccgaaggcattctgacccgaatg
ctgcagcaggatcccatgctggacggcgtatcattggttatcctggatgagtttcatgag
cgcagcctccaggccgatctggcgctggcgctgctgctggacgtgcagcaggggttgcgt
gaagatttgaaaatcctgctgatgtcggcgacgctcgataacgccaggctggcagccttg
ttaccgaatgcccctctcattacctcggaagggcggagctacccggttgaacgccgctac
acggcgttgagccagactctgcggtttgaagaggcggtggcgcgcgaagtcgcgcagttg
ctgcgagaggaaacgggctcactgctgttgtttctgcctggcgttgcggaaatcgagcgg
gtaaagcgagagctggaagcgcgcgttgacgctgatgtggatctgactccgctgtatggc
gcacttccccttgcggcccagcaacgggccatcctgcctgccgccagcggacgccgcaaa
gtggtgctggcgaccaacatcgccgaaaccagcctgacaattgaaggcattcgcctggtg
gtggacagcgcgcaggaacgaagcgcgctgtttgatgcccgcagcggtgtgacgcggctg
cagacccagcgcgtcagtcaggcctccatgacgcagcgcgccggacgagccggacgtgtc
atgcccggtatttgcctgcatctggtagcgcaggaacaggcctcacgcgcgcctgcgcag
agcgaagcggaaattttgcacagcgatctcacctcgctgtggctggagctgctgcagtgg
ggatgtacccgtatcgatcagctacagtggatcgatctgccgccggaaaagcatttgcgt
gcggcccggcagcagctgttgcggctgggggcgctggacgatcagggccatcttaatgcc
cagggacgacgaatggcgcagttgggcagcgacgcccgtcttagcgcgatgttatgtgcg
gcaggcggcgacgctgatgccgttgccagcgcggccttgctggtggccattctggaagat
cctcctcgcagcgccagcgtcgatttacgtgacgcgctttatcgtccatcgcctcagtgg
caacgccgcgcacagcactggcaaaaacgcatcggcgtcctcggtggccgggtggacgaa
gaccggtttgccgcgctgctgaccgctggattcagcgatcgcctggcacgacgtcgcgat
aacagcggccggtatcagctcgctaacggactgggcgcgatgctggacgaacaacaggca
ctgacgcgttacgaatggttaatcgcgcccacattgttacagggcagcagcgcgccggac
gcgcgcatcctgctggccatgcccgtcgatattgataccctgacgcaacagtgtccgctg
ctcgttgaacagcgtaccgaggtggaatgggatgaggagaaaggcacactgcgcacgttg
cggcgtgagcagattggcgaactggtcctgaaaacccaaccgcttgcccggcccgatgca
gaagtactgcaggcggccatgctacggtggatcagtaaaaaaggactctcggtgttgggc
tggacgccggcgtccgggcagttgcgcctgcgcattcagtgtgcggcccaatggttaccc
gaggagccatggcctcaggttgatgatgccagcctgcttgagtcgctcgaacactggctt
ctgcctgagatgagcggagtgcgcgacctgaagagtttacagtccgtgaaccttgtcagc
gcgctcttacatttgctcacatggtcacaacgtcagcggctggatactgtgctgccaact
cattacactgtgcccaccggaagtcggctgcccatccgctatgatgcggataaaccgcct
gcactggcggtacgcatccaggaaatgtttggcgaagccagcaatccgaccgtggcagaa
gggcgggttccactggtactggagctgttatcgcccgcccagcgccctttacagatcacc
cgcgatcttgcggccttctggcggggtgcctatgcggacgtgcaaaaagagatgaaaggg
cgttatcccaaacatctctggcctgacgatcctgcctctgccttgccgacaaggcggaca
aaaaagaatacgtcacagggcggaacctcaggttaa
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