Pantoea ananatis PA13: PAGR_g3715
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Entry
PAGR_g3715 CDS
T01970
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGR_g3715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g3715
03009 Ribosome biogenesis [BR:
paq03009
]
PAGR_g3715
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAGR_g3715
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGR_g3715
Ribosome biogenesis [BR:
paq03009
]
Prokaryotic type
rRNA helicases
PAGR_g3715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AER34204
LinkDB
All DBs
Position
complement(4043903..4045795)
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AA seq
630 aa
AA seq
DB search
MTDIQTTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLAKMQPEEELDIETL
AAALLKMAQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRRERRDVG
DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQH
FTRTRILNKPMNMQLLGDAQPHEGGRGERRPGAGAGERRGGGARPEGQGPRRFSSERREG
GREGGRSFNREGGRGPRREDGAAAPRRRDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgcagaacttggcctgaacgccgaactccttgaatca
ctgaacggcatgggctatgtcaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtattaggtatggcgcagaccgggagtggtaaaactgcagcgttc
tcgctgccgctgttacacaacatcgatccaactgttaaagcaccgcaaattttggtgctg
gcaccgacccgcgaactggcggtgcaggtagctgaagctgttaccgaattctctaaacat
atgcgcggtctgaacgtggttgccctttacggcggccagcgttatgacgtgcagctgcgc
gccctgcgccagggaccacaggttgtcgtaggtactccaggccgtctgctggatcacctg
aaacgtggcacgttagatctgtctaacctgcgtggtctggtgctggacgaagccgatgaa
atgttacgcatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccagaaggt
catcagaccgcactgttctctgccaccatgccagaagcgattcgtcgtattaccaagcgt
ttcatgaaagatccgcaggaagtgcgcattcagtcaagcatgactacgcgcccagacatc
agccagagctactggacggcttacggccgtaaaactgacgcgctggttcgcttccttgaa
gcagaagacttcgatgctgcgatcattttcgtgcgcactaaaaacgcaacgctggaagtg
gctgaagcgctggagcgcagcggttacaacagtgcggcactgaacggcgatatgaaccag
gcactgcgtgagcagacgctggagcgcctgaaagatggtcgtctggatatcctgattgct
accgacgttgcggcccgtggcctggacgttgagcgtatcagcctggttgttaactacgat
attccgatggacgcagaatcttacgttcaccgtatcggccgtaccggtcgtgctggtcgt
gcaggtcgcgcactgctgttcgtagagaaccgcgaacgtcgtctgctgcgtaacatcgaa
cgcaccatgaagctgaccattccagaagttgagctgccaaatgcagaactgctgggtcag
cgtcgtctggctaagttcgcggcaaaagttcagcagcagctggaaagcagcgatctggaa
cagtaccgtgcgctgctggcgaagatgcagcctgaagaagagctggatatcgaaacgctg
gctgctgcgctgctgaaaatggcacagggtgagcgtccgctgatcgttcctgctgatgca
ccacgtccagcgcgtcgtgaattccgtgagcgtgacgatcgtcgtgagagccgtgatgca
cgtggtccacgcgaaagccgtgatggcgaccgcccacgtcgcgaacgtcgtgacgttggc
gatatgcaactgtaccgcattgaagtgggccgtgacgacggtgttgaagtgcgtcacatc
gtgggcgcaattgccaacgaaggcgatatcagcagccgttacatcggtaacatcaaactg
tttggtacgcactccaccatcgagctgccgaaaggcatgccaggtgatgtgctgcagcac
tttacccgtacgcgtattctgaacaagccaatgaatatgcagctgctgggtgatgctcag
ccgcacgaaggtggccgtggcgagcgtcgtcctggcgctggtgctggcgaacgtcgtggc
ggcggtgcacgtcctgaaggtcagggcccgcgtcgtttctcttctgagcgccgtgaaggt
ggtcgtgaaggcggacgcagcttcaaccgcgaaggcggtcgtggtccacgtcgtgaagac
ggtgcggctgcaccacgtcgtcgtgacgcgtaa
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