Pantoea ananatis PA13: PAGR_g4101
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Entry
PAGR_g4101 CDS
T01970
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGR_g4101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paq03019
]
PAGR_g4101
03400 DNA repair and recombination proteins [BR:
paq03400
]
PAGR_g4101
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAGR_g4101
Messenger RNA biogenesis [BR:
paq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGR_g4101
DNA repair and recombination proteins [BR:
paq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PAGR_g4101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AER34586
LinkDB
All DBs
Position
complement(4481305..4483131)
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AA seq
608 aa
AA seq
DB search
MATSAVLNQEALAQQVLQDTFGYQQFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIP
ALVREGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTMTREQQQVVMADCRNGRVKLLY
IAPERLMMDNFLDSLAHWQPCMLAVDEAHCISQWGHDFRPEYGALGQMRQRFPDLPVMAL
TATADETTRLDIINLLHMQDPLIQISSFDRPNIRYTLVEKFKPTEQLLRYVQDQRGKCGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMAWLRKCLEEKQPGPL
QDIERHKLNAMNAFAEAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPKRYDGLVEAQKAL
SSIYRVGQRFGMGYIVEVLRGANNHRIREQGHDKLPVYGLGKENSHEHWVSVLRQLIHLG
LVTQNIAMHSALQLTEAARPVLRGEVPLMLAVPRLITARPKSSGSAKVYGGNYDRKLFAK
LRKLRKAIADEENIPPYVVFNDATLLEMAEQMPVSASEMLSVNGVGHRKLERFGKPFLLM
IKEHLDEE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacctcggcagttcttaatcaggaagcgttggcgcagcaggtattgcaggatacc
ttcggctaccagcagtttcgtcccggtcagcagacaatcataaatgaagcgctgagcggg
cgggattgcctggtggtgatgccgaccggcggcggtaaatcactctgctatcagattccg
gcgctggtgcgcgaggggctgacactggtggtgtcgccactcatctctctgatgaaagat
caggtggatcagctcctggcaaacggcgtggccgcggcctgtctgaactcgaccatgacg
cgcgagcagcagcaggttgtcatggccgattgccgcaacgggcgcgtgaagctgctctat
atcgcgccagaacgtctgatgatggacaactttcttgacagtctggcgcactggcagccc
tgtatgctggccgttgatgaggcgcactgtatttcccaatggggacatgatttccgaccg
gaatatggcgcgctgggacagatgcgccagcgctttcccgatctgcccgtcatggcgctg
acagcgaccgctgacgaaacgacccgtcttgatatcattaacctgctgcatatgcaggat
ccgctgattcaaatcagcagttttgaccgccccaatattcgttacacgctggtggaaaaa
tttaaacccactgagcagctgctgcgttacgtacaggatcagcgcggtaaatgcggcatt
atttactgtaacagccgggcaaaagttgaggataccgccgcacgtctgcaaagccggggg
ttaagcgttggggcatatcatgccggaatcgacagcgcccagcgcgcccgcgtacaggaa
gcgtttcagcgcgacgatttgcaaatcgtggtggcgaccgtggcatttgggatgggcatc
aacaagccgaacgtgcgttttgtggtgcactttgatattccacgcaacattgaatcctat
tatcaggaaacaggacgtgccggacgtgacggcctgccggcagaagccatgatgctctac
gatcctgctgatatggcctggctgcgcaaatgcctggaagagaagcagcctggcccgcta
caggatattgaacgtcacaagctgaatgcgatgaatgcttttgccgaagcgcagacctgc
cgtcgtttggtgctgctgaactactttggtgaaggacgtcagcagccctgcgggaactgc
gatatttgcctcgatccgccaaagcgctatgacggcctggtggaagcccaaaaggcactc
tccagtatttatcgcgtcggccagcgctttggtatgggctacattgttgaagtattgcgc
ggtgccaataatcatcgcatccgcgaacagggacacgacaagctgcccgtttatgggctg
ggtaaagaaaacagccacgagcattgggtcagcgtcctgcgtcagctgattcatctgggg
ctggtgacgcaaaacatcgccatgcattctgcgctgcagctaactgaagcggcccgaccg
gtattgcgcggtgaagttccgctgatgctggcggtgccaagactgattaccgccagaccg
aaaagcagcgggtcggccaaagtgtatggcggcaactacgaccgcaagctgtttgccaag
ctgcgtaaactgcgtaaagcgatagccgacgaagagaatattccgccctacgttgtgttt
aacgatgcaaccttgctggagatggcagagcagatgccggtgagcgcctcagaaatgctc
agcgtgaacggcgtggggcaccgcaaactggaacgtttcggtaagccgtttttgctgatg
attaaagaacatctcgatgaagagtaa
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