Pantoea ananatis PA13: PAGR_g4109
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Entry
PAGR_g4109 CDS
T01970
Name
(GenBank) DNA helicase II UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paq
Pantoea ananatis PA13
Pathway
paq03420
Nucleotide excision repair
paq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAGR_g4109
03430 Mismatch repair
PAGR_g4109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paq03400
]
PAGR_g4109
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAGR_g4109
DNA repair and recombination proteins [BR:
paq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAGR_g4109
MMR (mismatch excision repair)
Other MMR factors
PAGR_g4109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
AAA_30
UvrD_C_2
AAA_11
AAA_22
PhoH
Motif
Other DBs
NCBI-ProteinID:
AER34594
LinkDB
All DBs
Position
complement(4489220..4491382)
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AA seq
720 aa
AA seq
DB search
MDVSELLDGLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAV
TFTNKAAAEMRHRIEQLIGTSQGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPARQGMWYINGKKDEGLRPKHIESYGNPVEQTWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFSNILVDEFQDTNNIQYAWIRMLAGDS
GKVIIVGDDDQSIYGWRGAQVENIQRFLKDFPGADTIRLEQNYRSTNNILKSANALIANN
NGRLGKELWTDGSDGEPISVYCAFNELDESRFVVNRIKAWMENGNALADCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALAYLRLMANRNDDAAFERVVNTPTRGVGD
RTLDVVRQTAREKQMTLWQATRELLQSRALAGRAASALQRFCELVDSLASETVDMPLHVQ
TDRVIKDSGLWIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAAL
EAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFPSQMALDEGGRLEEERRLAY
VGVTRAMMKLTLTYAETRRLYGKEVYHRPSRFIGELPEACIEEVRLRASVTRPVSHQRMG
TPISKNDTGFALGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaactgctcgacggtttgaatgacaaacagcgcgaggccgttgcggcg
ccgcgcagtaacctgctggtgctggcgggcgcgggcagcggaaaaacacgcgttctggtg
caccgcatcgcctggctgctgtcggtagaaaactgctcgccgtactccattatggccgtg
acctttaccaacaaggcagccgcagagatgcgccaccgtattgagcagctcattggtacc
agccaggggggaatgtggataggcactttccacggtctggcacaccgcctgctgcgcgcg
catcatcttgacgcaggcctgccgcaggatttccagatcctcgacagtgaagaccagctg
cgcctgctcaagcgcctgattaaggcgatgaacctggatgagaagcagtggccggcgcgt
cagggcatgtggtacatcaacggcaagaaagatgaaggtttgcggcccaagcatattgaa
agctacggcaatccggtcgaacaaacctggctgcgcatataccaggcctaccaggaagca
tgcgatcgcgccgggctggtcgactttgctgaactgttgctgcgtgctcacgagctgtgg
ttaaacaaaccccatatcctgaatcattaccgtgagcgcttcagtaacattctggtggat
gagtttcaggataccaacaatattcagtacgcctggattcgcatgcttgcgggcgacagc
ggcaaagtgattatcgtgggtgacgacgatcagtcaatttacggctggcgcggtgcgcag
gtcgaaaacattcagcgctttttaaaggattttcccggcgcggataccattcgcctggag
caaaactaccgctcgaccaacaacattttgaagtcagcgaatgccctgatcgccaataac
aacggccgactggggaaagaactgtggactgacggcagcgatggtgagcccatttcggtt
tactgcgcctttaacgagctggatgaatcccgctttgtggtcaaccgtatcaaggcctgg
atggaaaacggcaatgcgctggcagattgcgccatcctgtatcgcagcaatgcccaatcg
cgtgtgctggaagaagccctgctacaggccagcatgccgtaccgtatctatggcggtatg
cgctttttcgaacgtcaggaaatcaaggacgcgctggcttatctgcgactgatggccaac
cgcaacgatgacgccgcctttgagcgcgtggtgaatacgccaacgcgcggtgtgggcgac
cgtacgctggatgtggtgcgtcagacggctcgggaaaagcagatgaccttatggcaggca
acgcgcgagctgcttcagtcgcgcgccctggccggtcgtgcggcctctgcgctgcaacgc
ttctgtgagttagtggattcgctggcaagcgaaaccgtggatatgccgctgcacgtgcag
accgacagagtcatcaaggattctggcctgtggatcatgtacgagcaggaaaagggtgaa
aagggccaggcccgtatcgaaaacctggaagaactggtgacggcaacgcgccagttcagc
taccaggatgaagacgaagatttgatgccgctgcaggcattcctttctcatgcggctctc
gaagccggggaaggccaggcggacaaatggcaggatgcggtgcagctgatgacgttgcac
tccgcgaaaggcctggagtttagccaggtgtttattgtcgggatggaagagggcatgttc
ccgagccagatggcgctggatgaaggcgggcgactggaagaagagcgtcgcctggcttac
gtcggcgtcacgcgtgccatgatgaagctgaccctgacctatgcggaaacccgccgtctt
tacggtaaagaagtctaccatcgaccttcacgttttattggcgaactgcctgaagcctgt
attgaagaagtccgtttacgcgccagtgtgacgcgaccggtcagtcatcagcgcatgggc
acgccgatcagcaaaaatgacacgggattcgccctggggcaacgcgttcgccacgccaaa
tttggtgaaggcactattgtgaatctcgaaggcagcggagaacacagccgcttgcaggtg
gcgtttcagggccaggggatcaagtggctggtggccgcctacgctaaactggaaaccgtc
tag
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