Kinneretia aquatilis: K9V56_003790
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Entry
K9V56_003790 CDS
T09144
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paqa
Kinneretia aquatilis
Pathway
paqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K9V56_003790 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqa03021
]
K9V56_003790 (rpoC)
03400 DNA repair and recombination proteins [BR:
paqa03400
]
K9V56_003790 (rpoC)
Enzymes [BR:
paqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K9V56_003790 (rpoC)
Transcription machinery [BR:
paqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K9V56_003790 (rpoC)
DNA repair and recombination proteins [BR:
paqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K9V56_003790 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WIV98638
LinkDB
All DBs
Position
886718..890938
Genome browser
AA seq
1406 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVIVDPGMTPLKKFAIMTEDDYDAKRVEFGDEFIALM
GAEGIKKLLEEMDLDIEIDKLRNDMTGSELKVKKNSKRLKVMEAFKRSGIKPSWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRERINGKGEGMVFSDIAEMIRALENGAV
EITAKINVRMTQYTKGATPGEWIPETKLVSTTVGRALLSEILPKGLPFSNIDKALKKKEI
SRLINTSFRKCGLKETVVLADKLLQSGFKLATRAGISIAVDDMLVPPQKPGLIERAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKTIDRHGKEVDEESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTDNGIAMRALVEGGEVIESLRDRILG
RVAATDVLHPETQAVLLTAGTMLDEDNLDVLEAAGADEVKVRTPLTCATRYGLCAKCYGR
DLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVDAKSDGLIGFN
ATMRYVTNGKGELVVISRSGEIIIADQHGRERERHKVPYGAILSIKPDQAIKAGTILANW
DPLTRPIITEFAGQAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLL
DANGQEVKIPGTDHSVTIGFPVGALVQVRDGQDLAPGEVLARIPMEGQKTRDITGGLPRV
AELFEARSPKDVGVLAELTGTVSFGKETKGKNRLEITDPDGKKHEELVPKEKNILVHEGQ
VVNRGELIVDGAADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQITNAGDSSYIINEQVERSELLDTNDRLRKEGKVPATYSDVLMGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHRARYAKEKMDDAERRA
IAQQEAEELASAQMASVDAGAEPAAE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttgctggaccttttcaagcagttcacacccgacgaacatttcgacgcaatc
aagatcgggctcgcatcgcccgagaagattcgctcgtggtctttcggcgaggtgaagaaa
cctgagaccatcaactaccgcacgttcaagcccgaacgcgacggcctgttctgcgccaag
atcttcggtcccatcaaggactacgaatgcctctgcggcaagtacaagcgcctgaagcac
cgcggcgtcatctgcgagaagtgcggcgttgaagtcacccagaccaaggtgcgtcgtgac
cgcatgggtcacatcgacctggccgcgccttgcgctcacatctggttcctgaagtccctg
ccttcgcgcctgggtctggtgctggacatgaccctgcgcgatatcgagcgcgtgctgtac
ttcgaagcgtacgtgatcgttgatccgggcatgaccccgctgaagaaattcgcgatcatg
accgaggacgactacgacgcgaagcgcgtggaattcggcgacgaattcatcgcgctgatg
ggcgccgagggcatcaagaagttgctggaagagatggatctcgacatcgagatcgacaag
ctccgcaacgacatgaccggctccgagctcaaggtcaagaagaactccaagcgcctcaag
gtcatggaagccttcaagcgttcgggcatcaagccgagctggatggtgctggaagtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgtctggctcgcctg
ctggagctgaaggcccccgagatcatcgtgcgcaacgaaaagcgcatgctgcaggaagcc
gtcgactcgctgctggacaacggccgtcgcggcaaggccatgaccggcgccaacaagcgt
gcgctcaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcagaacttg
ctgggtaagcgcgtcgactattccggtcgttcggtgattaccgtgggcccgaccctgaag
ctgcatcagtgcggtctgcccaagctgatggcgctggaactgttcaagcccttcatcttc
tcgcgcttggaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtcgaa
tccggcacccccgtggtctgggacatcctggaagaggtcatcaaggagcacccggttctg
ctgaaccgtgcgccgacgctgcaccgcctgggcattcaggctttcgagcccgtgctgatc
gaaggcaaggccatccagctgcacccgctcgtctgctcggccttcaatgccgacttcgac
ggtgaccagatggctgttcacgtgccgctgtcgatcgaagcgcagatggaagcccgcacc
ctgatgctggcctccaacaacgtgctgttccccgcgtcgggcgaaccgtcgatcgtgccg
tcgcaagacgtggtgctgggtctgtactacgcgacccgcgaacgtatcaacggcaagggc
gagggcatggtgttctcggacatcgcggaaatgatccgtgcgctggaaaacggcgccgtc
gagatcacggccaagatcaatgtccgcatgacccagtacaccaagggcgcaaccccgggt
gaatggatccccgagaccaagctggtgagcacgaccgtcggtcgcgcgctgctgagcgaa
atcctgcccaagggcctgccgttctcgaacatcgacaaggccctgaagaagaaggaaatc
tcgcgcctgatcaacacctccttccgcaagtgcggtctgaaggaaaccgtggtgctggcc
gacaagctgctgcagtccggtttcaagctggctacgcgcgcaggcatctcgatcgctgtg
gacgacatgctggtcccgccgcagaagccgggcctgatcgaacgcgccgagaaggaagtc
aaggagatcgagcagcagtacgtttccggtctcgtgaccgcgggcgagcgctacaacaag
gtcgtggacatctggggcaagaccggcgacgaagtcggcaaggtcatgatgagccagctg
tccaaacagaagaccatcgaccgtcatggcaaggaagtggacgaagaatcgttcaactcc
atttacatgatggccgactccggcgcccggggttctgccgctcagattcgccagttggca
ggtatgcggggtctgatggccaagccggacggctccatcatcgagacgccgattaccgcg
aacttccgcgaaggcctgaacgtgttgcagtacttcatctccacccacggtgctcgtaag
ggcctggcggatacggcgctgaagactgcgaactcgggttacctgacccgtcgtctggtc
gacgtgacgcaggatctggtggtgatcgaggacgattgcggcaccgacaacggcatcgcc
atgcgcgccctggtcgaaggcggtgaagtgatcgaatcgctgcgcgaccgcatcctgggt
cgtgtcgccgccaccgacgtgctgcaccctgaaacccaggccgtgctgctgaccgccggc
accatgctggacgaagacaacctcgacgtgctggaagctgccggcgccgacgaagtcaag
gtccgcaccccgctgacctgcgccacgcgctacggcctgtgcgccaagtgctacggccgc
gatctgggccgcggtggcctggtgaacgtgggcgaagcggtgggcgtgatcgctgcacag
tcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcggca
tcgcgtgcagctgtggcctcgagcgtggatgccaagtccgacggtctgatcggcttcaac
gccaccatgcgttatgtgaccaacggcaagggcgagttggtggtgatttcccgttccggc
gaaatcatcatcgccgaccagcacggtcgcgagcgtgagcgtcacaaggtgccgtacggt
gcgatcctgagcatcaagccggatcaagccatcaaggccggcaccatcttggccaattgg
gacccgctgacccgccccatcatcaccgagttcgccggtcaggcgaagttcgagaatgtg
gaagaaggcgtgaccgtggccaagcaggtcgacgaagtgaccggtctgtccaccctggtg
gtgatcgatcccaagcgtcgcggtgccgccaaggtggtgcgtccgcaagtcaagctgctg
gacgccaacggccaggaagtgaagatccctggcaccgaccactcggtgaccatcggcttc
ccggtcggcgcgctggtgcaggtgcgtgacggtcaagacctggccccgggtgaagtgctg
gcacgtatcccgatggaaggtcagaagacccgtgacattaccggcggtctgccgcgtgtg
gccgagctgttcgaagcccgttcgcccaaggatgtgggcgtgctggccgaattgaccggt
acggtgtcgttcggtaaggagaccaagggcaagaaccgcctggaaatcaccgaccccgat
ggcaagaagcacgaagagctggtgcccaaggaaaagaacatcctggtgcacgaaggccaa
gtggtcaaccgcggcgaattgattgtggacggcgcggccgacccgcaagacatcctgcgc
ctgctgggcatggaagagctggctcgctacatcgtcgacgaagtgcaggacgtgtaccgt
ttgcaaggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgt
cgtgtgcagatcaccaatgccggtgactccagctacatcatcaacgagcaagtggagcgc
tcggagctgctcgataccaacgatcgtctgcgcaaggaaggcaaggtcccggccacctat
tccgatgtgctgatgggtatcaccaaggcttcgctgtcgaccgactccttcatctcggcc
gcttccttccaggaaacgacccgcgtgctgaccgaggctgcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatccccgcaggtaccggc
atggctttccaccgcgcccgttatgccaaggagaagatggacgacgccgagcgccgcgcc
attgctcagcaagaagccgaggaattggcttctgcacagatggccagcgtcgacgcaggc
gccgagccggctgccgagtaa
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