Paucibacter aquatile: K9V56_010230
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Entry
K9V56_010230 CDS
T09144
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paqa
Paucibacter aquatile
Pathway
paqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9V56_010230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqa03019
]
K9V56_010230
Enzymes [BR:
paqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K9V56_010230
Messenger RNA biogenesis [BR:
paqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K9V56_010230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIV99815
LinkDB
All DBs
Position
complement(2372889..2374412)
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AA seq
507 aa
AA seq
DB search
MSFDSLGLAAPLLKAIADAGYTSPTPIQAQAIPAVLQGGDLMAGAQTGTGKTAGFTLPLL
HRLSEGAPVLNKRGKPAIRALVLTPTRELAAQVEESVKTYGKYLPLKSMVMFGGVGMQPQ
INRLRDGVDILVATPGRLLDHAQQGTLDLSQVQILVLDEADRMLDMGFVHDIKKVLALLP
AKKQSLLFSATFSDDIKNLADRLLNQPALIEVARRNQTNESIAQKVHPVGRERKKELLVH
LIKSGDWHQVLVFTRMKHGANRLTDYLNDQGISAMAIHGNKSQGARTKALADFKSGELTC
LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGAQGEAVSLVCVDENGFLR
EIEKLIKREIPKEVVNGFAPDPSERPEPIVLGRMILNGNGSRSGGGGRGNSRGGGGGGRP
GGRPGAGSRDGGSRDGGSRDGGAPRSSAPQGRSGQGGGGGGGGRPASSGRPGGGGSGRPQ
GGGGGGGGGNGGGAGRGQGARLTSPKR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgattctctaggcttggccgcgcctcttctgaaggccatcgccgacgctggt
tacacctcccccaccccgattcaagcccaagcgattcccgccgtcttgcaaggcggtgac
ctgatggccggtgcccagaccggcaccggcaagaccgccggcttcaccctgcccctgctg
caccgtctgagcgaaggcgccccggtgctgaacaagcgcggcaagcccgccatccgtgcc
ctggtgctgacgcccacccgcgaacttgcggcccaggtcgaagaaagcgtcaagacctac
ggcaaatacctgcccctgaagagcatggtgatgttcggcggcgtcggcatgcagccgcag
atcaaccgcctgcgcgacggcgtcgacatcctggtggccacccccggccgcctgctcgac
cacgcgcaacaaggcacgctggatctgtcgcaggttcagatcctggtgctggacgaagcc
gaccgcatgctggacatgggctttgtgcacgacatcaagaaggtgctggccctgctgccc
gccaagaagcagtcgctgctgttcagcgcgaccttcagcgatgacatcaagaacctggcc
gaccgtctgctgaaccagcccgccctgatcgaagtggcccgccgcaaccagaccaacgag
tcgattgcgcagaaggtccacccggtcggccgcgagcgcaagaaggaactgctggttcac
ttgatcaagagcggtgactggcaccaggtgctggtcttcacccgcatgaagcatggcgcc
aaccgcctgaccgactacctgaatgaccagggcatcagcgccatggccatccacggcaac
aagagccagggtgcacgcaccaaggccctggccgatttcaagagcggtgagctgacctgc
ctggtggcgaccgatattgcggcgcgcggcatcgacatcgaccagctaccccacgtcgtc
aactacgaactgcccaatgtccccgaggactatgtgcaccgcatcggccgcaccggccgc
gccggtgcccagggcgaggcggtcagcctggtctgcgtggacgagaacggcttcctgcgt
gagatcgaaaaactgatcaagcgcgagatccccaaggaagtggtgaacggctttgccccc
gatccgagcgaacgcccggaacccatcgtgctgggccgcatgatcttgaacggcaatggc
tcgcgcagcggcggcggtggccgtggcaactcgcgcggcggcggtggcggtggacgcccc
ggcggccgacccggcgccggctcgcgtgatggcggctcgcgcgacggtggttcgcgcgat
ggcggcgccccgcgctcctcggctccccaaggccgctcgggccagggtggtggcggtggc
ggcggtggtcgcccggcctcctcgggtcgccctggtggtggcggcagtggtcgtccccaa
ggcggtggcggcggcggtggtggtggcaatggtggcggcgcgggccgcggccaaggcgca
cgcctgacctcgcccaaacgctga
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