Kinneretia aquatilis: K9V56_013100
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Entry
K9V56_013100 CDS
T09144
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
paqa
Kinneretia aquatilis
Brite
KEGG Orthology (KO) [BR:
paqa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paqa03009
]
K9V56_013100 (rlmD)
Enzymes [BR:
paqa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K9V56_013100 (rlmD)
Ribosome biogenesis [BR:
paqa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K9V56_013100 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
RrnaAD
Methyltransf_15
MTS
Methyltransf_32
PrmA
Methyltransf_11
Cons_hypoth95
UPF0020
PCMT
TPMT
Motif
Other DBs
NCBI-ProteinID:
WIV95986
LinkDB
All DBs
Position
complement(3097521..3098876)
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AA seq
451 aa
AA seq
DB search
MSQETEWLTVESIDLDAQGVAHKQDGKVVFIEGALPGEQVQVSTGRKKNNWEQGTMTAMR
RESAQRVTPGCPHFGLHAGACGGCKMQHLHAGAQVAVKQRVVEDNLWHLGKVKPEMLLRP
IEGPTWGYRYRARFSVRYVPKKGQVLIGFHERKSRYVADMQVCKVVPQRVSDLLMPLRDL
IASMDERDRLPQIELAMGDEVIALVLRNLNPLLEPDRQRLRDFAALHPGVQWWLQPKGPE
TVHLLDEGGPELAYRLPEFGVVMPFKPTDFTQVNPHINTVLVGRALRLLSVQPDERVIDW
FCGLGNFTLPLATQAREVLGIEGSETLVQRSRENAARNGLADKTRFVARNLFEMTPDLLV
ADGVADKWLVDPPRDGAFALAKAVADIAQNPELAPGWTLPKRIVYVSCNPSTLARDAGLL
VNVAGYRCTAASAVNMFPHTSHVESIAVFER
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagaaacagaatggctgacggtcgaatcgatcgacctggatgcccagggcgtg
gcccacaagcaagacggcaaggtggtgttcatcgaaggcgccttgccgggtgaacaggtc
caggtcagcaccggccgcaagaagaacaactgggagcagggcacgatgacggccatgcgg
cgcgagagcgcccagcgcgtcacgcccggctgcccgcacttcggtctccatgccggtgcc
tgcggtggctgcaagatgcagcatctgcacgctggtgcccaggttgccgtgaagcagcgt
gtggtggaggacaacctctggcacctcggcaaggtcaagcccgagatgctgctgcgtccg
atcgaggggccgacctggggctaccgctaccgcgcccgcttttcggtgcgctatgtgccg
aagaagggtcaggtcttgatcggcttccacgagcgcaagagccgctacgtggccgatatg
caggtctgcaaggtggtgccgcagcgcgtcagcgacctgctgatgccgctgcgcgatctc
atcgccagcatggacgaacgcgaccgcctgccgcagatcgagctggccatgggcgacgag
gtcatcgccctggtgctgcgcaacctgaatcccctgttggagccggatcgtcagcgcctg
cgtgactttgcggcgctgcaccccggcgtgcaatggtggttgcagcccaaggggccggag
accgtgcatctgctcgatgaaggcggccccgagttggcctaccgtttgcccgagttcggc
gtggtcatgcccttcaagcccaccgatttcactcaggtcaatccgcacatcaacaccgtg
ctggtcggccgcgcgctgcgcttgctgtcggtgcagcctgatgagcgggtgatcgattgg
ttctgcggcctgggcaacttcaccttgcccttggcgacgcaggcgcgcgaggtcttgggc
atcgagggcagcgagaccctggtgcagcgctcgcgcgagaacgctgcgcgcaatggcctg
gccgacaagacccgctttgtggcccgcaatctgttcgagatgacgccggacttgctggtg
gccgatggcgtggccgataaatggctggtggacccgccgcgcgacggcgcctttgccttg
gccaaggcggtggccgatattgcgcagaacccggagctggcgcccggctggaccttgccc
aagcgcatcgtttacgtgtcctgcaacccgtccacactggcgcgcgatgcaggtttgctg
gtcaatgtggcaggctatcgctgcacggcggccagcgcggtcaatatgttcccgcacacc
tcgcatgtggagagcattgcggtgttcgagcgctga
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