Pseudemcibacter aquimaris: KW060_03440
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Entry
KW060_03440 CDS
T08836
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_03440 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_03440 (rnr)
03016 Transfer RNA biogenesis [BR:
paqi03016
]
KW060_03440 (rnr)
Enzymes [BR:
paqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KW060_03440 (rnr)
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KW060_03440 (rnr)
Transfer RNA biogenesis [BR:
paqi03016
]
Prokaryotic type
tRNA degradation factors
KW060_03440 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Symplekin_C
Motif
Other DBs
NCBI-ProteinID:
WDU59316
LinkDB
All DBs
Position
complement(706446..708674)
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AA seq
742 aa
AA seq
DB search
MAKSKVPFPDEEQILEFIRENPGRASKREISRAFHIRGDEKIQLKKLLRKMKLDGKLATA
SRSRLQVADELPPVLVIEVDGVDSHGDLTARPQNWDSDDHPPKILIYAHDRRNRLGIGDH
ALVRLTPNKDDSESGYIAKVIRKLEKKKSTQIMGIFRSDDDHIAFVNPTDKKDRNKYLIA
KNDWNGALDGSLVLIQIKPGRQRSRQIKAKPAKVIKSFGSINDAKSISLIAIMSQGIAIE
FPEEVLNEAQTADQPTLGNRVDLRDIPLITVDPSDARDHDDAIWAEMDPDPDNQGGCHII
VAIADVAHYVKPGSALDKEALKRGNSTYFPDRVVPMLPESLSNGLCSLHENEDRYTMAVH
IWFDKKGKKIRHKFIRALMRSHGSLSYEEFQYARDGIVSDRAEPLLETVINPLYDAYNIL
KKGREFREPLDLHMPEKKITLNDDGHIASIKERVSLDAHKLVEEFMIQANVAAAEELERK
QTPCMYRIHEQPSMEKVEGLRTFLDSLGYSFSKGQVLKPKIFNSLLKKVKESPQEDVIST
IVLRTQMQAEYNPENHGHFGLSLTRYAHFTSPIRRYADVLVHRGLIKALKLGKDGLSPFD
AGNMVETAEHISQTERNSMIAERQSTERYIAHYMSERIDEEFDGKINGVHRAGLFITLNE
TGGEGFIPASSLYSDYFHYDKEHHLLEGENSKIIYQLGDSVHVRLKEANPVSGGLIFELI
DERLHKIKGRKSNRRPRKRKRK
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatctaaagtcccattcccagatgaagaacagattttggagttcatccgggaa
aacccggggcgtgcctcaaagcgtgaaatttcgcgcgcctttcacattcgtggtgatgaa
aaaatccagcttaaaaaattgcttcgtaaaatgaagcttgatggcaaactcgcaacggct
tccagatcacgccttcaagtcgcggatgaactaccaccagttcttgttatcgaagtagac
ggtgttgacagccatggtgacctgacagcaaggccacaaaattgggatagtgatgaccat
cccccaaaaatcctaatttacgctcacgatcgaaggaatagacttgggatcggggatcat
gcgcttgtacggcttacgccgaacaaggatgatagtgaaagcggatatatcgccaaagtc
atccggaaattagagaaaaagaaatctacccaaataatgggtatctttcgttcggatgat
gatcatattgctttcgttaatccgacagataaaaaagaccgcaataaatatctaatcgcc
aagaatgattggaatggggcgttagatgggtcactggttctaatccagattaaaccaggc
cgacaacgatccagacagatcaaagcaaaaccagccaaggtcataaaatcatttggttcg
atcaatgatgctaaatccatcagcctgatcgcgatcatgtctcaagggatcgccattgaa
ttcccggaagaagtattaaatgaggcccaaacagcagatcaaccgacgttaggcaaccgt
gtggatttacgcgacattccattaatcacagtggacccatcagacgctcgcgatcatgac
gatgccatctgggccgagatggaccctgatccggataaccaaggcggatgccacatcatt
gtcgccattgccgatgtagcccattatgtaaaacccggatcggcacttgataaagaagcc
ctaaaacgtggtaattccacatacttcccagaccgggttgtaccaatgttaccagaaagc
ttatcaaacggtttatgttcacttcatgaaaatgaagaccgctatacaatggctgtacat
atttggtttgataagaagggcaaaaaaataagacataaattcattcgtgccctgatgaga
agccacggaagtttatcatacgaagaatttcaatatgcccgcgatggcatcgtgtctgac
cgtgcagaaccactgttagaaactgtgattaatccactgtatgacgcatataatatcctg
aagaaaggccgtgaatttagagagccactagatttacatatgcccgaaaagaaaatcact
ttaaatgatgacggtcatatcgcatcgattaaagaacgcgtcagtttggatgcccataaa
ctcgtcgaagaatttatgatacaagccaatgttgccgccgcagaagagcttgaaagaaaa
caaacaccctgcatgtaccgaatacatgaacaaccgagcatggaaaaagtggaaggctta
agaacattccttgatagtcttgggtatagtttctcgaaaggccaagttctaaaaccgaaa
attttcaatagccttcttaaaaaagtaaaagaatcaccgcaagaagatgtgatcagcaca
attgtgctacgcacccagatgcaggcggaatataaccccgaaaatcatggccatttcggt
ttatcgctgacaagatacgcgcatttcacctctccgatccgtcgttatgcggatgtgctt
gtgcaccgcggattaattaaagcgcttaaactgggaaaagacggcctaagcccctttgat
gccggcaacatggtggaaaccgcagaacacatcagccagacggaacgcaattcaatgatc
gccgaacgtcaatcaacggaacgatacatcgcccattatatgagcgaacgcattgacgaa
gagttcgatggaaagattaacggtgttcaccgtgcggggttgttcatcacccttaatgaa
acgggtggcgaagggtttatccccgcatcttcgttatacagtgattatttccattacgat
aaagaacatcacctgttagaaggcgaaaacagcaagatcatctatcagttaggtgattct
gtccatgtcagattaaaagaggcgaatccggtttccggtgggcttatttttgagctcata
gacgaaagattacacaaaataaaaggcagaaaatcaaaccgtcgccccagaaaacgaaaa
agaaaataa
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