Pseudemcibacter aquimaris: KW060_03445
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Entry
KW060_03445 CDS
T08836
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paqi
Pseudemcibacter aquimaris
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqi03032
]
KW060_03445 (topA)
03400 DNA repair and recombination proteins [BR:
paqi03400
]
KW060_03445 (topA)
Enzymes [BR:
paqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KW060_03445 (topA)
DNA replication proteins [BR:
paqi03032
]
Prokaryotic type
DNA Topoisomerases
KW060_03445 (topA)
DNA repair and recombination proteins [BR:
paqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KW060_03445 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WDU59317
LinkDB
All DBs
Position
complement(708683..711238)
Genome browser
AA seq
851 aa
AA seq
DB search
MKTVIVESPAKAKTINKYLGKDYNVLASFGHIRDLPSKDGSVDPENDFAMTWAVDTDSKK
RIKDIADSTKRSEELILATDPDREGEAISWHVLEVLNKRRGVMKDVAVKRVVFNEITKNA
ILKAMEEPRDVDQEMVEAYLTRRALDYLVGFNLSPVLWRKLPGSKSAGRVQSVALRLICE
RELEIEKFNSEEYWSIEAKLKNSTSKAFTAKLVTLNGEKLEKFTLNNEESANAAKAAVEA
ANFTVEDVVSKPTQRRPAAPFTTSTLQQEAARKLGFNAQRTMRTAQKLYEGIDIKGETTG
LITYMRTDGVNIAQEAINDARGVIGSNYGDNYVPAKPNFYKNKSKNAQEAHEAIRPTSLA
RLPKDVASKLDEDQRKLYELIWKRTIASQMANVQMEQTTADITSDDGKISLRATGTVQIF
DGFLTLYQEGVDDADEEDAKRLPKLSKGENIDKEKIDAIQHFTAPPPRFTEASLVKKMEE
LGIGRPSTYASILTVLRDRNYVVMEKNRFVPEGKGRVVTSFLEKYFNRYVQYDFTAGMEI
ELDRVSDGDVPWKEVLANFWLDFSKAIDDTKDLRVSEVLDVITDTLAPFIFPEREDGSDP
RKCPKCKEGGLSVKTGKFGAFIGCENYPECNYTRQIQNGEGENGDGADEGPQTLGIDPDS
GMEVTLRTGRFGPYIQLGEPVEKEKPKRASIPKGMSVEHISFEKALKLLALPRDVGMHPE
DGKVIKAAIGRYGPYVSHNGAFASLKDPEDVFNIGINHAVTLLAEAAAKKGKASEPLKDL
GEHPDGDGNVLVMDGRYGPYVKYKRVNATIPKDKDPMDVTMEEAVELIKARAAKGKKKPA
RKKAAPKKKAK
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgtaattgttgaatctccggcgaaagccaaaacaattaataaataccttggt
aaagactataatgttcttgccagtttcggccatattcgagacctgccgtccaaggatgga
tcggttgatcctgaaaatgattttgccatgacatgggccgttgatacggatagcaaaaaa
cgtatcaaggacattgccgacagcaccaaaagatcagaagaattgatcctcgcaaccgac
cccgaccgcgaaggggaagccatttcatggcacgttttagaagttctgaacaaacgccgt
ggggtcatgaaagacgttgcagtaaaacgcgttgttttcaatgaaattaccaaaaatgcc
attttaaaagcaatggaagaaccacgtgatgttgatcaggaaatggttgaagcatacctg
acaagacgcgcacttgattatcttgtgggctttaatctatcgccggtattatggcgtaaa
ttaccgggttcaaaatcagcgggtcgcgtgcaatcagttgcacttcgattaatttgcgaa
cgcgaacttgaaattgaaaaattcaattccgaagaatattggtcaatcgaagccaaactt
aaaaatagcacatcaaaagcattcaccgcgaagcttgtgactttaaacggtgaaaaactt
gaaaaattcacattaaataacgaagaaagcgcaaacgccgccaaagcagcggttgaagcc
gcgaacttcaccgttgaagatgtggttagcaagccaacgcagcgcagaccagctgcgcca
tttacaacatcaacccttcagcaggaagcagctcgtaagcttggctttaatgcgcagcgc
accatgcgtacagctcaaaaactttatgaaggcatcgatattaaaggtgaaacaacaggt
cttatcacctatatgcgtacggacggtgttaatatcgcacaagaagccatcaatgatgca
cgtggtgtcattggtagcaattatggtgataattacgttccggcaaaaccaaacttttat
aagaataaatccaaaaatgcgcaggaagctcacgaagcaatccgcccaacaagtctagcc
agacttccaaaagacgtggcaagcaaattggatgaagatcaaagaaaactttatgaacta
atctggaaacgtaccattgccagccaaatggcaaatgtacaaatggaacaaaccacagct
gatattacatcggatgacggcaaaatttcattacgcgcgaccggaacagtacaaattttt
gatggcttcctaactctttatcaggaaggggttgatgacgccgacgaagaagatgcaaaa
cgcctaccgaagctttctaaaggcgaaaatatcgataaagaaaaaatcgatgctattcag
catttcacagcccctcctccacgctttacagaggcgagcttggttaagaaaatggaagag
ctgggtattggtcgcccatcgacatatgcgtcaatccttacagtgttacgggaccgtaac
tatgttgtgatggaaaagaaccgctttgtgccagagggcaaaggccgcgttgtaacatca
ttccttgaaaaatatttcaaccgttatgttcaatatgactttacagcgggtatggaaatc
gaattggaccgcgtatcagatggtgatgttccgtggaaagaagttcttgctaatttctgg
ctagatttcagtaaggccattgatgatacaaaagatcttcgtgtttcagaagtgcttgat
gttatcacagatacacttgcaccatttattttcccggaacgcgaagacgggtctgatccg
cgcaaatgtccaaaatgtaaagagggtggccttagtgtaaaaacaggtaaattcggcgca
ttcatcggttgcgaaaattatccggaatgtaattacacacgccaaattcaaaatggcgag
ggtgaaaatggtgacggtgcagatgaaggaccacaaacacttggcattgacccagatagc
ggcatggaagtaacccttagaacaggtcgctttggcccttatatccaacttggtgaaccg
gttgaaaaagaaaaaccaaaacgcgcatccattccaaaaggaatgtccgtagaacatatt
agctttgaaaaagcgcttaagttgcttgcgttaccgcgtgatgtgggaatgcatcctgaa
gacggtaaagtgattaaagcggccattggccgttacggaccatatgtttcacataatggt
gcttttgcaagccttaaagatccagaagatgtgtttaacattggtattaaccacgcagtg
accctacttgcggaagcagccgcgaaaaaaggaaaagcatccgagccattaaaagatctg
ggcgaacatccagatggcgatggtaacgttcttgtcatggatggccgttatggaccatat
gtgaaatataaacgcgtaaatgcgaccattccaaaagataaagatccaatggacgtcacc
atggaagaagcggttgagctgatcaaagcaagggcagcaaaaggcaaaaagaagccagcc
cgtaaaaaggcagcacctaagaaaaaagccaaataa
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