Pseudemcibacter aquimaris: KW060_05395
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Entry
KW060_05395 CDS
T08836
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_05395
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KW060_05395
SSDB
Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WDU59689
LinkDB
All DBs
Position
1090353..1092020
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AA seq
555 aa
AA seq
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MSNDFKQLLYLPLGGSGEIGMNLNLYSYDNQWIMVDCGISFADDYLPGIDLIMPNVDFVD
GIKDDLKALVLTHAHEDHIGAVAHLWPRFGCPIYATPFTASLLRSKFSEAGLLDTVEINE
IPLGGQFSVGDFDMEYVTLTHSIPEPNALNIKTPLGTIFHTGDWKIDPDPLVGDNLDHKR
LKEIGDEGVLAIVCDSTNVFNKKPSGSELEVRETLIDIVKQKTQGAIFCTTFSSNIARLA
TLGEVAKITGRHLCLIGRSMKRNVAAAKECGYLQDLPPILDEDDASHIPRNKILFIMTGC
QGDARAALMRIVQDNHKLIHITKGDTVIFSSKVIPGNERTIYRVYNLIAEKGADIISEKD
AMVHVSGHPGQEELKQMYDWIRPEIVVPTHGENVHLNKQAEFAKSVGFKKTAVPKNGLAI
KLAPNGPEVINEVPVGRLALDGIHLIEDDDMAIVERRRIMHNGVMIIHLVVDTDGYLLAP
IDITAQGVPKGENEEHDKFVDDKLHEALGMATQKHLKDDDVLNELVRSVGRRASRRFTGK
GTGPITTVKITRIKK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgattttaaacagcttttatatttaccgcttggtggttctggcgaaattgga
atgaacctaaatttatattcctatgataatcaatggatcatggttgattgtggtatttca
tttgctgatgattatttgccgggcattgacctgattatgcctaatgtggatttcgttgat
ggtataaaggatgatttaaaggcgctcgtcttaacccatgcccatgaagatcacatcggt
gctgttgcgcatctttggccaaggtttggttgtccgatatacgcaacaccatttacagca
agccttttaagatcaaaattttctgaagcaggattattggatactgttgaaattaatgaa
attccattgggtggtcagttcagtgttggtgactttgatatggaatatgtaacgcttact
cattcaattccagaacccaatgcgctgaatattaaaacaccacttggaaccatattccat
acgggagattggaaaattgatcctgatccattggttggtgataaccttgatcataaaagg
ttaaaagagattggtgatgaaggggtgctggcgattgtttgcgacagcacaaacgtgttt
aataagaaaccgtccggttcagaattagaagttcgtgaaacattaatcgatatcgttaag
caaaaaactcaaggcgcgattttctgcaccacattttcatcaaatatcgcccgtcttgcc
acattgggtgaagtggcaaaaataacgggacgtcatttatgcctcatcggtcgttcgatg
aaacgaaatgtggctgctgccaaggaatgtggctatttgcaagatttgccgccaatcctg
gatgaggatgacgcatcacatatcccgcgtaataaaatattattcatcatgactggttgt
cagggggatgcccgcgctgcacttatgcgtattgtgcaggataatcataaacttattcat
attaccaagggggatacggtgatcttttcatcaaaggttatccccggcaatgaaagaacc
atataccgtgtttataatctgatcgctgaaaaaggggctgacatcatcagcgaaaaagat
gcaatggttcatgtgtccggtcatccgggtcaggaagaattaaaacaaatgtatgattgg
atcagaccggaaattgtcgttccaacccacggtgaaaatgtacatttaaataaacaggcc
gaatttgccaaatcagtcggctttaagaagacggccgtccctaaaaacggactggcgatc
aagttagccccaaatggtcccgaagtaatcaatgaagtgccggtgggaagactagcttta
gatggcattcatttgatcgaagatgatgatatggccatcgttgaacgccgccgcattatg
cacaatggcgtaatgatcattcatttggttgttgatacggatgggtatttattggcccca
attgatataacggcgcaaggggtgccaaaaggggaaaacgaagaacacgataaattcgtt
gatgataagttacatgaagcgcttggcatggccacgcaaaaacatttaaaagatgatgat
gtattaaatgaacttgtaaggtccgttggccgaagagcatccagaaggttcaccggaaaa
ggaacaggcccgatcacaacggtaaaaataacaaggatcaagaaatga
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