Pseudemcibacter aquimaris: KW060_05440
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Entry
KW060_05440 CDS
T08836
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03030
DNA replication
paqi03430
Mismatch repair
paqi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KW060_05440 (dnaE)
03430 Mismatch repair
KW060_05440 (dnaE)
03440 Homologous recombination
KW060_05440 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqi03032
]
KW060_05440 (dnaE)
03400 DNA repair and recombination proteins [BR:
paqi03400
]
KW060_05440 (dnaE)
Enzymes [BR:
paqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KW060_05440 (dnaE)
DNA replication proteins [BR:
paqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KW060_05440 (dnaE)
DNA repair and recombination proteins [BR:
paqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KW060_05440 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WDU59698
LinkDB
All DBs
Position
1098689..1102213
Genome browser
AA seq
1174 aa
AA seq
DB search
MSAAQQFVHLRLHSAYSLAEGAVPVKEIGKHCVGNKMPAVAITDTNNMFGALDASLNLPP
QGVQPIIGCTIAIRHELTGDNINKPAPEPGWIVLLAQTQVGYENLMVLVSKAHLDSDPSE
TPQIAIDDLSGHTGDLICLTGGVNGPVGKFLQDEENEKAEECLKHLNSMFAGRLYMEIAR
TGLKVQDQLEGTFIDLAYKYDIPLVATNQVFFPKRKMYEAHDALLCIAGGNYVEQTDRRK
ETPENYFKSTDEMVKLFEDLPEAIQNTVVIAQRCAYKVPTIDPILPKFTIGEGMSEADSL
RQVTKEGLDARLEAHVFHGETDEEKRAEMAKPYYERMEYELGIIINMDFPGYFLIVMDFI
QWSKDHDIPVGPGRGSGAGSVVAWALKITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQ
DKRGLVIDYVQEKYGADQVAQIITFGKLQARAVVRDVGRVLQMPYGQVDRLSKLIPSNPA
NPMTLSEAIESEKKLREEIAGDPNTSRLIDIALQLEGLFRHASTHAAGVVIGDRPLDQLV
PLYRDPRSDMPVTQFNMKFVEQAGLVKFDFLGLKTLTVLKKAVEYIANRDIVVDLEKTPL
DDGPSYELLCRGDTVGVFQLESTGMQSVLMNMKPDMFEDIIAVVALYRPGPMDNIPRYIA
CKHGEEEPDYMHPLLEEILTETYGVIIYQEQVMIIAQILADYSLGDADLLRRAMGKKIAS
EMDKQRARFQDGADKKGVDPKQAAAIFDQVAKFAGYGFNKSHAAAYALVSYHTAYLKANY
AVEFMAAIMTLDLTNTDKLHIFKQELNNLNIPILPPDVNKSQVEFTAEVIEGETDDDKVG
GYMSDGKLRGVRYALAGLKNVGAAAMESLVAERDANGPFKDMDDFCNRVDTRQINKRALE
NLIKAGAFDSINPNRAQLHEGVEMMLREMSLATQERNSNQVSLFGDQVEEHSIVLPEVNN
WDLIEKLKCEKEAVGFYLSAHPLDAYTSVLARQKVIPSTEIAERATGKGGVVRLAGTIQG
IRKMKSKRGKAYAFLSLSDAHGGFEVTLFSELLDAVDEILTGGNSVIITAEVRHSDDGGL
RVTAQGIETIDNVALRTGAGLDVYLKDASNLDAIKEILEPHKKGRGRVTFKLNVKHEDFP
DCDVDVELKDKYKISPSIRNAVASLKGVIDAREI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggcacagcaattcgttcatttaagattacattctgcatattcactggcggaa
ggggctgtgcccgtaaaggaaattggtaaacactgcgttggtaataaaatgcccgcggtg
gcgattacagataccaataacatgtttggtgcgcttgatgcgtcactgaacttaccaccc
caaggggtgcagccgattattgggtgtaccatcgcaatccgtcatgagcttactggcgat
aacatcaataaacctgcaccggagccgggttggatcgtgttgcttgcgcaaacgcaggtg
ggttatgaaaatctgatggtgcttgttagtaaagctcatcttgattctgatccatcagaa
acaccgcagattgccattgatgatttaagcggccatacgggtgatctgatctgtttaacg
gggggcgttaatggcccggtaggtaagtttttacaggacgaagagaacgaaaaggcggaa
gaatgtttaaagcatttaaacagcatgttcgcaggccgcctttatatggaaattgcccgc
acggggcttaaggttcaagatcagcttgagggtacttttatcgatctggcctataaatac
gacattccgctggtcgcgaccaatcaggtgtttttcccaaaacgtaaaatgtatgaagcc
catgatgcgctgctttgcattgctggtggtaattatgtggaacaaaccgaccgccgtaaa
gaaacgccggaaaattatttcaaatctaccgatgaaatggtgaagcttttcgaagatctg
ccggaagccattcaaaataccgtcgtgattgcacagcgctgcgcatacaaagtgccaacc
attgacccgatcctgccaaaattcacaatcggtgagggcatgagtgaggcggacagcctg
cgtcaggttaccaaagaagggttagacgcaaggttagaggcgcatgtatttcacggcgaa
acagacgaagaaaaacgagccgaaatggccaagccatattacgaacgtatggaatatgaa
ctgggcatcattatcaatatggatttcccgggttatttcctgatcgttatggattttatc
caatggtccaaggatcatgacattcccgtggggccgggccgtggttccggtgcgggttct
gtggttgcatgggctcttaaaattaccgatcttgacccattgcgtttcggacttctgttt
gaacgtttcttgaacccggaacgtgtgtcgatgcctgacttcgatattgacttctgtcag
gataaacgcggtcttgtgattgattatgtgcaggaaaaatacggcgccgaccaagtggcg
cagattattactttcggtaagctgcaagcccgcgcggtggtgcgtgatgtgggtcgcgtg
ctacaaatgccatatgggcaggtcgatagactttcaaaattgatcccgagtaaccctgcg
aacccgatgaccttgtcagaagccatcgaaagcgaaaaaaaattacgcgaagaaattgcg
ggtgatccaaatacatctcgtctgattgatatcgcgcttcagcttgaaggattattccgc
catgcatcgacccacgccgccggtgtggtgattggcgataggccgcttgatcaattggtg
ccgctttaccgcgatccgcgttccgatatgccggtaacacaatttaatatgaaattcgtg
gaacaggcgggccttgttaaatttgacttcttgggattaaaaacgcttacggttctaaaa
aaggcggtcgaatatatcgccaatcgtgacattgtggtcgaccttgaaaaaacaccactt
gatgatgggccatcttatgagcttctttgtcgcggtgacacggtcggcgtgttccagctt
gaaagtacagggatgcagagcgttctgatgaacatgaaacccgacatgttcgaagacatc
atcgcggtggtggcgctttatcgtcctggtccgatggataacattccgcgttacattgct
tgtaaacatggcgaagaagaaccggattatatgcatccgctcttggaggaaatcctcacc
gaaacatatggcgtgatcatttatcaggaacaggtgatgatcatcgcgcagattctcgcg
gattattcccttggtgatgcggacttgctgcgccgtgcgatgggtaagaaaatcgcgtcc
gaaatggataagcagcgcgcaaggttccaggacggtgccgataaaaagggcgtagacccg
aaacaggccgccgccattttcgaccaagtggcgaaattcgcgggttatggttttaacaaa
agtcacgccgccgcttatgcgcttgtttcctatcatacggcatacttaaaggccaactac
gcggttgaatttatggccgcgatcatgacacttgatctaaccaacacagacaagcttcat
atttttaaacaggaactgaataacctgaatattccaatcctgccgccagacgtcaataaa
tcacaggtcgaattcaccgcagaggtcatcgagggtgaaaccgatgatgacaaggtcggc
ggttacatgagtgacggtaaactgcgtggtgtgcgttatgcgcttgcgggtcttaaaaat
gtgggcgcagcggcgatggaaagccttgtggcggaacgtgacgcaaacggcccgtttaaa
gatatggatgatttctgtaaccgtgttgatacgagacagattaacaaacgtgcccttgaa
aatctgattaaggccggtgctttcgacagcatcaacccgaaccgtgcgcaactgcacgag
ggcgtagaaatgatgctccgtgaaatgagcctcgcgacacaggaaagaaattcaaatcaa
gtaagccttttcggtgatcaggttgaggaacattcaattgtcctaccagaagttaacaat
tgggatttgatagaaaaactgaaatgcgaaaaagaagcggttggtttttacctctccgcc
catccgcttgatgcctatacatccgtgctcgcccgtcaaaaagttatcccaagcaccgaa
attgccgaacgcgccacgggtaagggcggtgtggtgcgccttgccggaaccatccaaggt
atccgcaaaatgaaatccaagcgtggtaaggcatacgcgttcttaagtctttccgatgcc
catggtggttttgaagtgacgttattctcggaactgctagacgctgttgatgaaatcctg
acgggcggtaattccgtgatcattaccgccgaagtacgccatagcgatgatggtggcctg
cgtgttaccgcgcaaggcattgaaaccatcgataacgtggcactgcgcacgggcgcaggg
cttgatgtttatcttaaagatgcaagtaatcttgatgcaattaaggaaatccttgaaccc
cataaaaagggacgtggacgcgttacattcaagctaaacgtcaaacacgaagattttcca
gattgcgatgtggatgtggaacttaaagataaatataaaatctccccatccatccgtaat
gcggtggcgtcattaaaaggcgtgatcgacgccagagaaatttaa
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