Pseudemcibacter aquimaris: KW060_05565
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Entry
KW060_05565 CDS
T08836
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_05565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_05565
03009 Ribosome biogenesis [BR:
paqi03009
]
KW060_05565
Enzymes [BR:
paqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KW060_05565
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KW060_05565
Ribosome biogenesis [BR:
paqi03009
]
Prokaryotic type
rRNA processing factors
KW060_05565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WDU59722
LinkDB
All DBs
Position
complement(1130942..1133785)
Genome browser
AA seq
947 aa
AA seq
DB search
MSIRMLIDASHREETRVAIVDGNRVEDFDYESSAKKQLKGSIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALIEEEKARNADLLEDEENNKAAVKSEKDEPSD
ENDEVIAEENTEAEEKTVDESSSEEAAVPEETSDDVKADETAEATEEVQEEEEKPKRRRG
RPRKKKTETKAESTKEDVITSSEEEAKEDASEADDANEDVSDVEAEKTSDEENSSDDVAA
EVTEEAEENKPDEDASDEATDEEETNNAQSEEDEEERLRIRMAKRLRYKYKIQEVIKKGQ
IILIQVVKEERGNKGAALTTYLSLPGRYCVLMPNTLHGGGVSRKIANVKDRKKLKNVLSS
LNLPKGHACIIRTAGSDRTKAEIKRDYDYLKRMWEAIREHTLKSIAPTLIYEEGNLIKRS
IRDLYTRDISEILVEGERGYKTAKSFMQMLMPSHARKIKYYSDQIPLFQRYQVENHLDSM
YGPTAQLKSGGYIVINPTEALVSIDVNSGRATKEHNIEETALNTNLEAAEEIARQLKLRD
MSGLVVIDFIDMEEQRNNRAVERKMKACLKSDRARIQVGRISSFGLMEMSRQRLRTGVLE
SSTIQCPHCDGSGLLRTVESQSLHILRIIEEEGIRARNSKFKVFLPSRVAIYLLNNKRRS
LRDLEERYDFSVEIAIDDELTASAYRMDRSGKPSRKSKKRHDALKLGKDVNKLIDVTEED
VSADDEKQDKPKRRRRRRRNRNNKRRENQENQSENTEENEVSAEETDAENQENSEKGRRR
RRPRRGRGRDKDNAEKSTEEVTEQDASPSEVKTEDAKTDEVKSDEEKPKRKPRRTRKKAD
TDKSEEANAEKSDDVKEEKPKRARRTRKKKEDAETSEKPEEGKTEEKAEKPKRAPRKRAV
KKTEEKEEKPASENKKETEAPKAEKPKEEKPADDKPKKKGWWSRALS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattcgtatgttgatcgacgcctcccaccgggaagagacccgtgtggccatcgtc
gacggaaaccgtgtagaggacttcgattatgagagttctgcaaaaaaacaactcaaaggc
agcatctatctagcaaaggtaacccgcgtagaaccatcgcttcaagcagcgttcgttgat
tacggcggcaaccgtcatggattcttagcttttagtgaaattcaccctgattactatcaa
attcctgtagcggaccgtgaagcgcttatcgaagaagaaaaagcaagaaacgctgatctt
cttgaagatgaagaaaataacaaagcggctgttaaatcagaaaaagatgagccttctgat
gaaaatgatgaagtaatagcagaagaaaacactgaagccgaagaaaaaacagtggatgaa
tcatcatctgaagaagcggcggttcctgaagaaacatctgatgacgtaaaagcagatgaa
actgctgaagcgacagaagaggttcaggaagaggaagagaaaccaaagcgtcgccgtggc
cgccctcgcaagaaaaaaacagaaaccaaagctgaatcaacaaaagaagatgtaattaca
tcaagcgaagaagaagccaaagaagatgcttctgaagcggatgacgcaaacgaagatgtt
tctgatgttgaagcagagaaaacgtcagatgaagaaaattcttcagatgatgttgcagcc
gaagttactgaagaagctgaagaaaataaacctgacgaagatgcatcagatgaagcaact
gatgaagaagaaacaaataacgctcaaagcgaagaagacgaagaggaacgtcttcgtatt
cgtatggcaaaaagacttcgttataaatataaaattcaggaagtgatcaaaaaaggtcaa
atcattctgatccaagtggtgaaagaagaacgcggcaataaaggtgctgcgcttacaact
tacctttcactacctggtcgttactgtgttcttatgccaaacactttgcatggtggcggc
gttagccgtaaaattgcaaatgttaaagaccgcaagaagttaaagaatgttttatcaagc
ctgaacctgccaaaaggccatgcttgcatcatccgcacagctggcagcgatagaaccaag
gcagaaattaaacgcgattatgattatcttaaacggatgtgggaagcgatccgggaacat
accctgaaatccattgcccctaccctgatttatgaagagggtaatcttataaaacgcagt
atccgcgatttatacacccgggacatcagcgaaattctggtggaaggtgaacgtggctat
aaaacggcaaaaagctttatgcagatgttaatgccgagccacgcaagaaaaataaagtat
tacagtgaccagattccactgttccagcgctatcaggtggaaaaccatctggattcaatg
tatggcccaacggcgcaattaaagtccggcggatatattgttatcaatccaaccgaagcc
cttgtttcgattgatgtgaactcgggccgtgcgaccaaagaacataatattgaagaaaca
gcgctcaatacaaaccttgaggccgcagaagaaatcgcaagacagttaaagcttcgcgat
atgtccggccttgtggttattgatttcattgatatggaagaacagcgcaacaaccgtgcg
gttgagcgtaaaatgaaggcatgcctaaaatcagaccgtgctcgcattcaagttggccgt
atcagttcattcggcctaatggaaatgtcacgccagcgcttgcgcacaggtgtattggaa
agcagtacaatacaatgtccacattgtgatggtagtggccttcttagaactgttgaatca
caaagtcttcatattcttcgcatcatcgaagaagaaggcatccgtgcaagaaattcaaaa
ttcaaagtattcctgccttcacgtgttgcaatttatttacttaataacaaacgtagaagc
ttaagagaccttgaagaacgttatgatttctcagttgagattgcgattgatgatgaatta
actgcatcagcataccgcatggaccgttctggaaaaccatccagaaaatccaaaaagcgt
catgatgctttaaaacttggcaaagatgtcaataagttaatcgatgttacggaagaagat
gtttctgcagatgatgaaaagcaggataaaccgaaacgtcgccgcagaagaagacgtaac
cgcaataacaaaagacgcgaaaatcaagaaaaccaaagcgaaaacacagaagagaatgaa
gtaagcgcagaagaaacagacgctgaaaaccaagaaaattctgaaaaaggtcgccgtcgc
cgccgccctcgtcgtggacgtggacgcgataaagataatgcggaaaaatcaactgaagaa
gttactgaacaagacgcttcgccatcagaagtaaaaacagaagatgcgaaaactgatgaa
gtaaaatctgacgaagaaaaaccaaaaagaaaaccacgccgcacacgcaaaaaggcagac
actgataaatcagaagaagcaaatgctgaaaaatctgatgatgtaaaggaagagaagcca
aaacgcgcgagacgcacacgaaagaaaaaagaagatgctgaaacttctgaaaaacctgaa
gaaggcaaaacagaagaaaaggcagaaaaaccaaaacgtgctccgcgtaagcgtgctgtg
aagaaaactgaagaaaaggaagaaaaaccagcttcagaaaacaaaaaagagacagaagca
ccaaaggcggaaaaacctaaagaagagaaacccgccgatgacaagcctaagaaaaaaggc
tggtggtcaagagctcttagctaa
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