Pseudemcibacter aquimaris: KW060_06745
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Entry
KW060_06745 CDS
T08836
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_06745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_06745
Enzymes [BR:
paqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KW060_06745
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KW060_06745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
ERCC3_RAD25_C
SUa-2TM
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WDU59952
LinkDB
All DBs
Position
complement(1391313..1392692)
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AA seq
459 aa
AA seq
DB search
MTKFTELGLRAPILRAIEEGGYETMTPIQSKAIPKVLAGHDLIALAQTGTGKTAAFSLPI
IQLLLAGEGKRKPKTARSLILAPTRELALQIEENIRGYAKYLHYKIALLFGGVSQNPQIK
TLEQGVDILIATPGRLLDLMNQGHVKLGSVEYFVLDEADRMLDMGFIRDIRKIVARLPEN
RQTLFFSATMPKQVEGLANDILNNPDHVQVAPQSTTVEKIDQYVLYVPKNLKNKLLAHIL
KDDDIKRVIIFTRTKHGANRVSRKLDQLGITSAAIHGNKSQNARQKALNQFRDGEIRTLV
ATDVAARGIDVDGITHVINFDLPNEEESYVHRIGRTARAGKTGISLSFCDHEERDYLKRI
EKLIRKKLMVMDEHPFHLEGVQPADYAEPDDDGDEEKRKPRPRNRNRNRNRNRNNVPRNP
ENKGGRNKKNKSNKPANAQKQGTNTKPNKNKRRKTRKPR
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgactaaatttacggaacttggtcttagggcccctattcttcgtgcgatagaagaaggc
ggctatgaaaccatgacccccattcaatctaaagccatccccaaagtacttgcggggcat
gacttgattgcgcttgcgcagacaggaaccggaaagacggccgctttttcattaccgatt
attcaattattgctggccggcgaaggaaagcgcaaaccaaaaacggcaagatcgcttatt
ctcgcccctacccgtgaacttgcgttacaaatcgaagaaaatattcgcggatacgcaaaa
taccttcattataaaattgcgcttctttttggtggggtatcacaaaacccgcaaattaaa
acattggaacaaggtgtcgatatcctgatcgcgacgccggggcgactgcttgatttaatg
aaccaagggcatgttaagctgggttcagttgaatatttcgtgcttgatgaagcagaccgt
atgctggatatgggttttattcgtgacattcgaaaaattgtagcaagacttcctgaaaat
cgtcagacgctattcttttccgcaaccatgccaaagcaggttgagggattagcaaatgac
atcttgaataatcccgatcatgtccaagtggccccgcaatcaaccacagttgaaaaaatc
gatcaatatgtgctgtatgtgccgaaaaatttaaaaaataagctgctcgcgcatatttta
aaagatgatgatatcaaacgggttattatctttacccgcacaaaacatggtgcgaaccgt
gtatcaagaaagctggatcaacttggtattacatcagctgcaatccatggcaataaatca
caaaacgcgaggcaaaaagcactcaatcaatttcgtgatggtgaaattcgcacgcttgtg
gcaacggatgtggctgcacgtggtattgacgttgacggcattactcatgtgattaatttt
gaccttccgaacgaagaagaaagctacgttcaccgcattggcagaacagcaagagccgga
aaaaccggaatatcattatcattttgtgaccacgaagaacgcgattatttaaaacgcatt
gaaaaattaatccgcaagaaattgatggtgatggatgaacacccctttcatttagaaggc
gttcaaccagccgattacgcggaaccagacgatgacggtgatgaggaaaaacgaaaacca
cgtccacgtaacaggaaccgcaatcgtaaccgcaacagaaataatgttccaagaaatcct
gaaaacaaaggcggccggaataaaaagaacaaaagcaataaacctgcgaatgctcaaaaa
cagggcacaaatacaaaaccgaataaaaacaaacgcaggaaaaccagaaaaccgcgttaa
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