Pseudemcibacter aquimaris: KW060_08180
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Entry
KW060_08180 CDS
T08836
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_08180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_08180
Enzymes [BR:
paqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KW060_08180
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KW060_08180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
DUF960
Motif
Other DBs
NCBI-ProteinID:
WDU57173
LinkDB
All DBs
Position
complement(1708180..1709925)
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AA seq
581 aa
AA seq
DB search
MTDEQMSEDHVAVDAVTFDNFGFHKSILKSLKKQGFITPTPIQNMAILPVMSGTDLMGIA
QTGSGKTAAFSLPTINKLIPDYEKPEKHRPKALILAPTRELVMQIGKFINEFSRGTPITS
LVIAGGQSYKPQISKLKSGVDILIATPGRLIDHMQQKTVRLDRCETFILDEADRMLDMGF
IEEVKSIQESLNEDHQTVMFTATMNAKVRKLSLELLKDPEYVEQERKTMVADTITHKLMN
VRRKDKTQLLIDLLSDESIDKALVFARTKLGADRLCDELKEAFRETPLRIDAIHGDKKQR
TREKILMNYRKGRTRVLVATDVAARGIDVDGITHVINYELPIEAENYVHRVGRTGRAGES
GLAISFCDPSDLRLLKGIEELLKIKVDVDDNHEFHFEASDVRSNKKGRGKGRGRADRPRA
KFDKSRGRAKKKDDRNDDFENKPSRPRKTTGKIRTEMPARADRPKSDKPKRDQKSDSKRY
NPSKFDPLDSMFGFDDDPVLKKLQGKSSTRKKKAATKSGDAEVSKKKKTTKRDHFDDAAK
AKPKRKPGKAVAKKNKTKPSRADRKKVKQTGGHKAFKPKRR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaacaaatgtcagaagatcatgttgctgttgatgcagtaacatttgataat
tttggttttcataaatccatacttaaatccctaaagaaacaagggtttatcacaccaact
ccaattcagaatatggccattttgccggtcatgagtggtactgatttaatgggtattgcg
caaacgggttcgggtaagacggctgccttttcattgccgacgatcaataaattaattcca
gattatgaaaagccggaaaagcatcgcccaaaggcattgatccttgcaccgacacgtgaa
cttgtgatgcaaatcggtaaattcattaatgaatttagccgcggtacaccaatcacgagc
ctcgtgattgccggtggtcaaagctataaaccacaaatcagcaagttaaaatccggtgtt
gatatccttatcgcaacgcccgggcgtcttattgatcatatgcagcagaaaacagttcgc
cttgacaggtgtgagacattcattcttgatgaagccgaccgtatgcttgatatgggcttt
attgaagaggttaaatcaattcaggaatctttaaacgaagatcaccaaacggtgatgttc
accgcgacaatgaacgcgaaagttcgtaaattatcattggaacttcttaaagacccggaa
tatgtggaacaagaacgcaaaacgatggtggctgataccattacccacaaattgatgaat
gtgcgccgcaaagataaaacgcagcttcttattgatctattatccgatgaatccattgat
aaggcacttgtgtttgcgcgtacaaaacttggtgcggataggctttgtgatgaattaaaa
gaagcatttcgtgaaacgccattacgcattgacgccatccacggtgataaaaagcagcgt
acccgtgaaaaaatcctgatgaattatagaaaaggacgcacacgcgttcttgtggcaacc
gatgttgccgcgcgtggtatcgatgtcgatggaattactcatgtgatcaattatgaatta
cccattgaagccgaaaattacgttcaccgtgttggcagaacaggccgcgcgggcgaaagc
ggtcttgccatatcattctgtgatccaagcgatttacgccttcttaaagggattgaagag
cttttgaagattaaagtggatgtggatgataatcacgaatttcattttgaagcatccgat
gttcgttcaaataaaaaaggacgcggtaaaggacgcggcagagctgaccgtccgcgtgcg
aaatttgataaaagccgagggcgcgcgaaaaagaaagatgatcgcaacgacgatttcgaa
aataaaccgtcacgtccacgcaaaacaaccggcaaaatcagaacggaaatgcctgcacgt
gccgatagacctaaatctgataagccaaaacgcgatcaaaaatcagatagcaaaagatat
aatccatcaaaatttgatccgttagacagcatgttcggttttgatgatgatccggttctt
aaaaaacttcagggcaaatcatcaacccgcaagaaaaaagcggcaaccaaatccggtgat
gcagaggtttcaaagaaaaagaaaaccacaaaacgcgatcattttgatgacgctgcaaaa
gcaaagccaaaacgtaaacctggtaaggcagtagcaaagaaaaacaaaacaaaaccatca
cgcgcagaccgtaaaaaagtcaagcaaactggtggacataaagcttttaaaccaaaacgc
aggtaa
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