Pseudemcibacter aquimaris: KW060_10345
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Entry
KW060_10345 CDS
T08836
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
paqi
Pseudemcibacter aquimaris
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqi03400
]
KW060_10345 (addB)
Enzymes [BR:
paqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KW060_10345 (addB)
DNA repair and recombination proteins [BR:
paqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KW060_10345 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WDU57594
LinkDB
All DBs
Position
complement(2197117..2200062)
Genome browser
AA seq
981 aa
AA seq
DB search
MPRRLQKNPEIYNIRASLSFVDVLANGIYERFGDNPITLSEVLILLPNRRAVRSLRDAFL
RLNDGKPTILPNMQPIGDVDEDGLIMAGGTLYDDLDLKPAVPASIRQMILMNIIHDWHKA
EKKDIPENATCAVLAEALGSLLDQVQTEEIDFASMEDIVPDEYAIHWQQTLEFLKIVTEM
WPDILATTGYMDAADRRNRLLRGLAEKWINNPPQFPIIAAGSTGSIKSTAHLLSVISRLP
NGMVVLPGVDQNMDDDTWEKIEETHPQSTMKHLLDEIGVDRVEINNWDGSDPSIDHQKTT
FFREIMRPAETTHLWRDLEAQKHDDITQIVTPGSREEAGVIALMMREQLEIPGKTAALVT
PDRMLARQVAGELNRWGVEIDDSAGTPLFNKAVGVYLRLSAEMIAENFSPVSLMSMLKHP
LTAGGHNIADFRANVRLFERKYLRGPRPPAGLYGIEKVMDHESGSDDALYDWWQGLKDII
EPFDAMLADPNVTFADMLIAHIEMAEKLAATDEVSGENRIWKGDDGEAAAKLIEDLQQAA
PYMRYFKADQYAALFDQFMKSVTVRSKYGQHPRLNIWGPLEARLQHADLMILSGLNEGVW
PPEAGDDPWMSRPMRRDFGLPGLEQKIGLSAHDFVQTASAGNVVITRAEKQDGTPTVKSR
WLNRLHAIIGDHHHEAESAKWLGWYKDIDAPDKEIKIDPPAPKPPVDKRPRNLSVTRIQQ
WMQDPYSIYASKILNLKKLDELDQDPGAIDKGVMIHDILDEFMSRHKDYLPDDAEEILID
IGHKYFKEKIDKPTVRTFWWPRFKQIAKWFIETERLRRENIKTLATETNGRIDLKPFGGM
FTLTAKADRIDLMADDTLSIIDYKTGSPPTLRSLKAGYTPQLPLEGVIAAQGGFDLIPDY
QISDLSYWQLSGGETPGKISSFNASRKVDVMEEVQKSYDGLIKLVTTFDLPETPYLSNPN
PMQRGYGEFDHLARAKEWGDG
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgccaagacggcttcagaaaaatcctgaaatatataacattcgtgcatcgctctcgttt
gtggatgtgcttgcaaatgggatttatgaacgttttggcgataatccgatcaccttaagc
gaagtattgatattattgccgaaccgtcgcgcggtcaggtcattacgcgacgctttttta
agattaaatgatggcaagccaacaatccttcccaatatgcagccaattggcgatgtggat
gaagacgggcttattatggctggcggcacgttatatgacgaccttgatttaaaacctgct
gtacccgcatccatccgccagatgattttgatgaatatcattcatgattggcataaggca
gaaaagaaagatattccggaaaacgcgacctgtgctgttttggcggaggcgttaggatca
ctgcttgatcaggttcaaacagaagaaattgatttcgccagtatggaagatattgttcct
gacgaatatgccatccactggcaacagacgctggaatttttaaaaattgtcacggaaatg
tggccggatatcttggctacaacgggatatatggatgcggcggacaggcgtaaccggtta
ttacgtgggcttgccgaaaaatggattaataatccgccgcagtttccgattattgctgcg
ggttcaacgggatctatcaaatcgacggcgcatttgctttcggtgatttcccgtcttccg
aatggtatggtggtgcttccgggggtcgatcagaacatggatgatgatacatgggaaaaa
atcgaagaaacccatccacaatccaccatgaaacacttacttgatgaaatcggcgttgac
cgtgttgaaattaacaattgggatggcagtgatccatcaatagatcatcaaaaaacaaca
tttttcagggaaattatgcgccccgcagaaacaacccatctatggcgcgatctggaagca
caaaaacatgatgatatcacccaaattgtgacaccgggcagtcgggaagaggcaggtgtc
attgcccttatgatgcgtgagcaattagaaataccgggaaaaacggctgcgcttgtaacc
ccggacaggatgcttgcaaggcaggtagcaggggaattgaaccgttggggcgtcgaaatt
gatgatagtgccggtacaccgctttttaataaggcagtgggtgtgtatttacgactttcg
gccgaaatgatcgctgaaaactttagccccgtttcacttatgagcatgctaaagcacccg
ttaactgcgggagggcataatattgctgacttccgggcgaatgtcaggctttttgaaaga
aaatacctgcgcggcccaagaccgccagcggggctctacggcattgaaaaagtcatggat
catgaaagcggatcggatgatgcattatatgattggtggcaagggttaaaggatatcatt
gagccttttgatgccatgcttgccgatccgaatgtgacatttgcggatatgttgatcgcc
catattgaaatggcagaaaagctggcggcaacagatgaggtatctggtgaaaatcgcatt
tggaaaggcgatgatggtgaggcagccgcaaaattaatcgaggatttacagcaagcagca
ccttatatgaggtatttcaaggccgaccaatatgcggcactgtttgatcaatttatgaaa
tcggttaccgtacgttccaaatacgggcaacatccccgtcttaatatttgggggccactt
gaggcaaggttacagcatgcggatttgatgatcctgtccggtcttaacgaaggggtatgg
ccaccggaagcaggcgatgacccgtggatgagccgcccgatgcgtcgtgatttcggtctt
ccgggattggaacagaaaattggcttaagcgcccatgattttgtgcaaacagcatcagca
ggtaatgtggtaatcacccgtgcagaaaaacaggacggcaccccgactgtgaaatccaga
tggttaaacagactgcatgcaatcattggtgatcaccatcatgaggcggaaagcgcaaaa
tggcttggttggtataaagatattgatgcaccggataaggaaattaaaattgatccaccc
gcgccaaaaccgcccgtggataaaagaccgcggaacttatcggttacacgcattcaacaa
tggatgcaggacccttatagcatttacgccagtaaaatattgaaccttaaaaaattggat
gaattggatcaggacccgggtgccattgataagggggtcatgatccatgatattcttgat
gaatttatgtcgcgtcataaagattatctgccggatgatgcggaagaaatattgatcgat
atcggtcataaatatttcaaggaaaaaatcgataaaccaacggtgcggacattctggtgg
ccaaggtttaaacagatcgcgaaatggttcattgaaacggaacggttgcgccgtgaaaat
atcaaaacacttgccacagaaacaaatggtagaattgatttaaaaccattcggtggcatg
tttaccttaactgccaaagccgaccgtattgatttaatggcggacgatacattaagcatc
attgattataaaacgggttccccacccacgttacggtcattaaaggcagggtatacaccg
caactgccattagaaggggtgatcgctgcacaaggcgggtttgatttaattcctgattac
cagataagcgatctttcttattggcaattatccggcggggaaacgcccggcaaaataagt
tcctttaacgcgtcacgaaaagtcgacgtgatggaagaggtgcaaaaatcatatgatggt
ttaattaagctggttaccacatttgatttaccggaaacgccatatctttccaacccaaac
ccaatgcaacggggatatggtgaatttgatcaccttgcccgcgccaaagagtggggggat
ggttaa
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