Pseudemcibacter aquimaris: KW060_11200
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Entry
KW060_11200 CDS
T08836
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_11200 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_11200 (recQ)
03400 DNA repair and recombination proteins [BR:
paqi03400
]
KW060_11200 (recQ)
Enzymes [BR:
paqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KW060_11200 (recQ)
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KW060_11200 (recQ)
DNA repair and recombination proteins [BR:
paqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KW060_11200 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-ProteinID:
WDU57763
LinkDB
All DBs
Position
complement(2384442..2386259)
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AA seq
605 aa
AA seq
DB search
MNNSSAEEVLKDVFGFDAFRGKQKQIIEHIISGENVLAVMPTGAGKSLCFQLPGLMMDGL
TIVVSPLISLMQNQVEALKIAGVAAETINSNTGPDEGREIWRKINDGTLKFLYVSPEKLM
TEQMLDRVDELNVSLFAIDEAHCISQWGAAFRPEYEDLALLHRRYPNIPIIALTATADKG
TREQICEKIFSDNVKTYLTGFDRPNIALNVEIKAGWKKQLLKFMKDRPGNENGIVYCLSR
KKTEEATAILMESGYNALPYHAGMTGNDRERNLNKFMTEPDLIMVATIAFGMGIDKPDIR
FVFHTDLPSSPEAYYQEIGRAGRDGDASIAHMLYGLDDIRMRRMFIDNEQSDDGHKRRGH
QRLNALLSYAEAPECRRVTLLRYFGDDPEYEKCGNCDLCQNPRETVDAVEAGQKFISAIY
RTGQSFGVAHIVNIVTGKMTDKISQLNHDMLPTFGVGKEYSINEWKVIARQLMARGFIVS
DMEYGSLKITDEGFDLLRGNGEFRYRPDVSYKKSATSSNKKSAQVVQELPSEDQDLYLKL
KSLRKEIAAERSVPAYIIFSDKSLIDMAVQKPTSYDDFGGVYGVGAEKQKKFAKQFTEFI
AENLV
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaataattcatctgccgaagaggtcttaaaggatgtcttcggctttgacgcctttcgc
ggcaaacaaaaacaaattatcgaacatattatttctggtgaaaatgtccttgcggtgatg
cctacgggggcgggtaaatcgctctgttttcaattgccgggcttaatgatggatggatta
acaattgttgtttcacccttaatttcattaatgcaaaatcaggtggaagccttaaaaatc
gcgggcgtcgccgcagaaaccattaattcaaatacgggtccggatgagggacgggaaatt
tggcgaaaaatcaatgatgggacattgaagttcctttatgtatcgccggaaaaattaatg
actgaacaaatgctggaccgcgttgatgaattgaatgtgtcgttatttgcaattgatgaa
gcgcattgtatttcgcagtggggcgcagcctttcgtccggaatatgaagaccttgcctta
ttacatcgccgttacccgaatattcccattattgcgctaaccgcgacggcggataaggga
acgcgcgagcaaatttgtgaaaagatattttcagataatgtgaaaacctatctgaccggg
tttgaccgtcctaacattgcgcttaatgtggaaataaaggcgggctggaaaaaacaactt
ttaaaatttatgaaagatcgccccggtaatgaaaacgggattgtctattgcctgtcccgt
aaaaagacggaagaggccacagccatattaatggaaagcgggtataacgcgcttccgtac
catgcgggtatgacgggcaatgaccgtgaacgaaatttaaataaatttatgactgaaccg
gatttgatcatggtcgcgaccatcgcatttgggatgggcattgataaaccggatattcgt
tttgtgttccatacggatttgcccagctcacccgaagcatactatcaggaaatcggccgg
gcaggacgggacggtgatgcatcgatagcgcatatgttatacggccttgatgatattcgg
atgcggcgtatgttcattgataatgaacagtccgatgacgggcataaaagacgcggtcat
caacgtttaaacgcactgctgtcttatgcagaagcaccggaatgtcgccgggtaacattg
ctgcggtattttggcgatgatccggaatatgaaaaatgcggtaattgtgatttatgccaa
aacccgcgtgaaacggttgatgcggtggaagcagggcaaaaattcatttcagccatttac
cgcacggggcaaagttttggtgttgctcatattgttaatatcgttaccggaaaaatgacg
gataaaatcagtcagcttaatcatgatatgttgccgacatttggcgtcggtaaagaatat
tcgattaatgagtggaaagtgattgcccgccaattaatggcacgcggttttattgtatcg
gatatggagtatggatcgcttaaaatcacggacgaaggatttgatttattaaggggaaat
ggcgaatttagatatcgacctgacgttagctataaaaaatccgcgacctcaagtaataaa
aaatccgcgcaagtggttcaagaactgccaagtgaggatcaggatttatatttgaaatta
aaatcactgcgtaaggaaattgccgcagaacggtcggtgcctgcttacattattttttca
gataaaagccttatcgacatggccgtgcaaaagccgacatcatatgatgattttggcggc
gtatatggtgttggtgctgaaaaacagaaaaaattcgcgaaacagtttactgaatttatt
gcggaaaatctggtttaa
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