Pseudemcibacter aquimaris: KW060_12890
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Entry
KW060_12890 CDS
T08836
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
paqi
Pseudemcibacter aquimaris
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paqi03009
]
KW060_12890 (rlmD)
Enzymes [BR:
paqi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KW060_12890 (rlmD)
Ribosome biogenesis [BR:
paqi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KW060_12890 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
TRM5-TYW2_MTfase
MTS
Methyltransf_25
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
WDU58087
LinkDB
All DBs
Position
complement(2743484..2744740)
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AA seq
418 aa
AA seq
DB search
MNHKVTINEIGGRGDGLAEVDGKTIYIPYTVPGDVIDAKIQGSKGKLRHIHQKSTERAEP
ICKHFGKCGGCLLQHINADYYKNWKEGLIRTALAHQGSKDADIAPIKVSPMGSRRRTTFQ
AIGRGNGNIVFGYAEKGSHNLIDVFECPILAPELVALIGPIKKLISGILDKKEKMSVSLT
LAENGIDMMLKGKGDPSLNLRMDLAEFAEKHDLARISWFDTKLKKGQYELLAERKKPYVT
FEGNKVYFPSGSFLQATQQGQDALINAMLDGIGDASKVVDLFSGCGTFSIAAANSSNVHA
VENNEEMLTALKLSANQMTGIKKVTTELRDLFKRPLLPHELNEFDAAIIDPPRAGAKHQM
EEIIKSDIQKLVMISCNPITFSRDVQSLIDAGFEMGAVTPVDQFLYAPHLEIVSVFTR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataaagtaacaataaatgaaattggtggtcgtggtgatggcctagccgaggtg
gacggtaaaacgatttatattccatacacagtgccgggtgatgttattgatgccaaaatt
caggggtcaaaaggaaaattacgtcatatccatcagaaatccaccgaacgtgcggaaccc
atttgcaaacatttcggtaaatgcggtggttgtttattgcagcacattaatgctgattat
tataaaaactggaaagaagggttgatcagaacggcccttgcccaccaaggcagcaaggat
gcagatattgcaccgattaaagtgagcccgatgggcagccgcagacgaacaacatttcag
gcaattggccgtggtaacggaaatattgtttttggttatgcagaaaaaggtagtcataat
ctgatcgatgtttttgaatgcccgatcttggcaccggaattggttgcgttaatagggccg
attaaaaaattgatatccggcattcttgataaaaaagaaaaaatgtccgtctctctaacc
cttgctgaaaatggcattgatatgatgttaaagggcaagggtgacccgagcctgaattta
agaatggatcttgcggaattcgcggaaaagcatgaccttgcccgtattagctggtttgat
acaaaacttaaaaaagggcaatatgaattgctcgcggaacgtaaaaagccatatgtgaca
ttcgaagggaataaagtatatttcccatccggttcatttttacaggcaacccaacaaggg
caagatgcacttattaatgcaatgcttgatggcattggtgatgcgtcaaaggtggttgat
ttattttctgggtgcggcacattttcaattgcggctgccaatagttccaatgttcatgcg
gtggaaaataacgaagaaatgctaaccgcattaaaattaagtgcaaatcaaatgacgggc
attaaaaaggttacaacggaacttcgtgatctttttaagcggccattattgccacatgaa
cttaatgaatttgatgcggcgattattgacccgccacgcgcgggcgcaaaacatcaaatg
gaagaaatcattaaatcagatattcaaaagctggtgatgatttcatgcaatccgattact
ttttcaagggatgtgcaaagtttaattgatgctggttttgaaatgggtgcggtaacgccc
gttgatcagtttttatatgcaccacaccttgaaattgtttctgtctttacacgctaa
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