Pseudemcibacter aquimaris: KW060_13605
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Entry
KW060_13605 CDS
T08836
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KW060_13605 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqi03021
]
KW060_13605 (rpoD)
Transcription machinery [BR:
paqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KW060_13605 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4168
Motif
Other DBs
NCBI-ProteinID:
WDU58223
LinkDB
All DBs
Position
2892564..2894555
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AA seq
663 aa
AA seq
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MAEKANKAKKEEETTDAPVVDSQKAVKKMIAEAKKRGYITYDALNEALPQDQMSSEQIED
VMTMLSEMGINVVDNADTDEASEKEDAEEEKASTTEEAKPEAKAPADRTDDPVRMYLREM
GSVELLSREGEIAIAKRIEAGRETMISGLCDSPLTFDALAAWGEMLEEEEILLRDVIDLD
AMYGNDPTQETDATPTASVEEIEEDDDDDVTDDEDAPENQGENEDGSNMDEGVEENDDDG
VTMSLATMEEALHPRVMEIFAEIRKVHKKFAKLQELRHESNIGNTQLTPAQEKRYRKLSD
ELIVLVNNLRLNNNRIEALLEQLYSSSKRLMGLEGKMLRLAERYKVSRKSYLDNYWGREL
DPTWVKEMSGEKSKGWDSFIGNEADIVQNMRDQVKEIAKDVGLNISEFRVIVNKVQKGEK
EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMMHEIGREATPEELAARLSMP
LEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPVDSAIQTNLRDTTTRVLAS
LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF
LDK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaaagccaacaaggcaaaaaaagaagaagaaacaaccgacgcaccggtagtg
gacagccaaaaagccgttaaaaaaatgatcgcagaagcgaaaaaacgcggctacatcaca
tatgatgccctcaatgaagcgcttccgcaggatcaaatgtcatccgagcagatcgaagac
gttatgacaatgttatccgaaatgggtattaatgttgttgataacgccgatacggatgaa
gccagcgaaaaagaagacgcggaagaagaaaaagcaagcaccaccgaagaggcaaagccg
gaagcaaaagcacctgctgaccggacagatgatccggttagaatgtatcttcgtgaaatg
ggtagcgttgagctactttcccgtgaaggtgaaattgcaatcgcgaaacgtatcgaggca
ggccgcgaaacaatgatttccggattgtgcgatagtccgcttacctttgatgctcttgct
gcatggggtgagatgttagaggaagaagaaattcttcttcgtgatgtgattgatctggac
gctatgtatgggaatgacccaacgcaggaaacagatgccacaccgacagcctctgttgaa
gagatcgaagaagacgacgacgacgatgtcaccgacgatgaagacgcacctgaaaatcag
ggcgaaaacgaagacggcagcaacatggatgaaggcgtcgaagaaaatgatgacgatggc
gtcaccatgtctcttgccaccatggaagaagcccttcacccgcgtgtcatggaaattttt
gcagagatcagaaaagttcacaagaaattcgcaaaactgcaagagcttcgtcatgaatca
aatatcggcaatactcagctaacaccagcgcaggaaaaacgttaccgtaaattaagcgat
gaactaatcgttcttgttaataatctacgcttgaataacaaccgtatcgaagctctcctt
gaacagctttattcatcaagtaaacgcctgatgggccttgaaggaaaaatgctgcgcctt
gcggaacgttataaagtgagccgcaaatcatatcttgataattactggggccgcgaactt
gacccaacatgggttaaggaaatgtcaggtgaaaaatcaaaaggctgggacagctttatt
ggcaatgaagcggatattgtgcaaaatatgcgtgatcaggtgaaagaaatcgctaaggat
gttggccttaacatttcagaattccgtgtgatcgtaaataaggttcaaaagggtgaaaaa
gaagcccgtatcgccaaaaaagaaatggtggaagcgaaccttcgccttgtaatttcgatt
gccaagaaatacaccaaccgtggccttcaattcctggaccttattcaggaaggaaacatc
ggcctgatgaaagcggttgataaatttgaatatcgccgtggttataaattctccacttat
gcgacatggtggatcagacaggccattacccgttcgattgcggatcaggcccgcacaatc
cgtattccggttcacatgatcgaaacgatcaacaaacttgtacgtacgggtcgtcaaatg
atgcatgaaattggccgtgaagcgacgccggaagagctggcagcacgcctctctatgccg
cttgaaaaagtgcgtaaggtgatgaaaattgctaaagaaccaatttcccttgaaacaccg
atcggtgacgaggaagattcacatcttggtgatttcatcgaagacaaaaacgcaatcctt
cctgtggatagtgccattcagacaaacttgcgtgatacgacaacacgcgtacttgcaagt
ctgacaccacgtgaagaacgcgttcttcgtatgcgttttggtatcggaatgaacaccgac
cacacccttgaggaagtcggtcagcagttttccgtaacacgtgaacggatcagacagatc
gaggcaaaagcacttcgcaaactgaaacatccaagccgttccagaaagcttagaagcttc
cttgataagtaa
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