Pseudemcibacter aquimaris: KW060_15495
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Entry
KW060_15495 CDS
T08836
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_15495 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqi03021
]
KW060_15495 (rho)
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_15495 (rho)
Transcription machinery [BR:
paqi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KW060_15495 (rho)
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KW060_15495 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
NACHT
S1CSD-TOTE-2
ATPase_2
AAA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WDU58587
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All DBs
Position
3291825..3293081
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AA seq
418 aa
AA seq
DB search
MNLLDLKKKSPADILSLAEENDVENASNMRKQDMMFAILKAYASRGEEISGGGVVEVLQD
GFGFLRSPESNYLPGPDDIYVSPSQIKRFGLRTGDTVEGLIRAPKDGERYFALLKVSAVN
YKDPDAGKHKVHFDSLTPLHPDRKFKLDRDDPTIKDKSTRVIDLVAPIGFGQRGVIVAPP
RTGKTVLMQNVAHAIKENHPDVFLIVLLIDERPEEVTDMRRSVKGEVVSSTFDEPASRHV
QVAEMVIEKAKRLVENKYDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVSDKRIFPAIDI
TKSGTRKEELLLDAGTLAKMYVLRRILMPMGSVDAIEFLLNKLKDTKDNEEFYSSMNN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctattggaccttaaaaagaaatcccccgcagacattttatcacttgctgaagaa
aatgatgttgaaaatgccagcaacatgcgcaagcaggatatgatgtttgccattcttaaa
gcttatgcatcacggggagaggaaatttccggcggcggtgttgtagaagtattacaggat
ggatttgggtttttaagatcaccagaatcaaattatctaccgggccctgatgatatttac
gtcagcccgagccagattaaacgttttggtctaagaacaggtgacacggtagaaggtttg
atccgtgcaccgaaagatggcgagcgttatttcgcacttcttaaagtttctgcggtaaat
tataaagaccctgatgctggaaaacacaaagttcactttgatagtcttacgccgcttcat
ccagaccggaaatttaaactggaccgtgatgatccaaccattaaagacaaatcaacacgt
gttattgatcttgtggcaccaattggatttggtcagcgtggtgtgattgtggcgccgcca
agaactggtaaaacggtattgatgcagaatgttgcacatgccattaaagaaaatcatccg
gatgtgtttttgatcgttcttcttattgatgaacgcccggaagaggtaaccgacatgcgc
cgctctgttaaaggggaagttgtaagttcaacatttgatgaaccagcgagccgtcacgtt
caagtggctgaaatggttattgaaaaagcaaaacgacttgttgaaaataaatatgatgtc
gtaattttgctagatagtattactcgacttgcacgtgcatataacacggttattccaagc
tccggtaaagtgcttaccggtggtgttgatgccaatgcgcttcaacgtccgaaacgtttc
tttggtgcagcgcgtaatgttgaagaggggggctctttaacaatcatcgcaacagcgctt
attgacaccggaagccgtatggatgaggttatctttgaggaatttaaaggtacaggtaac
tctgagattgttcttgaccgtaaggttagtgataaacgtatcttcccagcgattgatatt
accaagtccggtacacgtaaggaagaattacttcttgatgctggaacgctcgcgaagatg
tatgttcttcgccgtatcttgatgccaatgggatctgttgatgcgattgaattccttctt
aataaacttaaagatactaaggataatgaagagttttacagttcgatgaataactaa
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