Candidatus Paraluminiphilus aquimaris: E0F26_00825
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Entry
E0F26_00825 CDS
T09832
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0F26_00825 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqm03021
]
E0F26_00825 (rho)
03019 Messenger RNA biogenesis [BR:
paqm03019
]
E0F26_00825 (rho)
Transcription machinery [BR:
paqm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
E0F26_00825 (rho)
Messenger RNA biogenesis [BR:
paqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E0F26_00825 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
Mor
AAA_25
NACHT
AAA
Motif
Other DBs
NCBI-ProteinID:
UZP75515
UniProt:
A0ABY6QAA9
LinkDB
All DBs
Position
172859..174127
Genome browser
AA seq
422 aa
AA seq
DB search
MSLTELKTKSTQELIDMAAEMGIENMARSRKQDIIFSLLKRHAKSGEDIFGDGVLEILSD
GFGFLRSADSSFLAGPDDIYVSPSQIRRFNLRTGDTVTGMIRPPKDSERYFALLKVSEVN
FESPETAKAKILFENLTPLFPDERLTLEKGNGSTEDLTGRIIDLCSPIGKGQRGLLVAPP
KAGKTIMMQSVAQAIISNNPECYIIVLLIDERPEEVTEMQRSVGARGAEVVASTFDEPPS
RHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALERP
KRFFGAARNIEEGGSLSIIATALTETGSKMDEVIYEEFKGTGNMELHLDRKISEKRVYPA
INIRRSGTRREELLTGEDELQRMWILRKLLHGMEDLPAIEFLQDKLRDTKSNDEFFRSMK
RK
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccgagcttaagacgaagtcgacacaagaattaatcgacatggcggcagag
atgggcatcgagaacatggcccggtctcgcaagcaagacattattttctcgttactgaag
cgacatgcgaagagtggcgaagatattttcggtgacggcgtactcgaaatcctatcggac
ggctttggtttcttaagatcggcagacagctccttcctcgccgggcccgacgatatttac
gtaagtccaagtcaaattcgccgctttaatttgcggaccggtgacacggtcacggggatg
attagacccccaaaggactccgagcgttattttgccctgttgaaagtcagcgaagttaac
tttgagtcgcccgagacggcgaaggcaaaaattctatttgagaacctcaccccattgttc
cccgacgagcgcctgacgctggaaaaaggcaatggctcaacagaggatctaacaggtcga
atcatcgacttgtgctcgccaattggtaaggggcaacgaggcctgctcgtggcaccgcca
aaggcgggtaaaacaatcatgatgcaaagtgttgcccaggcgatcatcagcaataacccc
gagtgctacatcatcgttttgctgatcgacgaacgtcctgaagaagtaactgaaatgcag
cgctccgttggcgctcgaggcgccgaagtggttgcctctacgtttgacgagccgccttca
cgacacgttcaagtggctgatatggtcattgagaaagcaaagcgcttagttgagcacaag
cgcgatgtcgtaatcttactcgactcgattacacgtctggcgcgcgcctacaacacggtc
gtacccagctcaggaaaggtcttaaccggtggtgttgacgcgcacgcgctcgagcgcccg
aagcgtttctttggtgcagcgcgtaatatcgaggaaggcggcagcctctcaattatcgca
acagcgctcactgagaccggctctaagatggatgaagttatctacgaggagttcaaaggt
accggtaacatggagctgcacctagatcgcaagatctcggagaagcgtgtgtaccccgct
attaatattagacgctcaggcacgcgccgcgaggaactcctgacgggagaagacgaattg
cagcgtatgtggattttacgaaagcttctccatggtatggaggacctccccgctattgag
ttcctgcaagacaaactccgggacactaagtccaacgatgagttcttccgctctatgaag
cggaagtaa
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